From 1c02316f9cc44b092d72cd361964fcaac04be357 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Fri, 5 Aug 2022 13:16:36 +0200
Subject: Align text with actual BIMBAM 0-2 range

---
 doc/manual.tex | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'doc/manual.tex')

diff --git a/doc/manual.tex b/doc/manual.tex
index 7021e3c..d6e33fe 100644
--- a/doc/manual.tex
+++ b/doc/manual.tex
@@ -404,10 +404,10 @@ rs1, A, T, 0.02, 0.80, 1.50
 rs2, G, C, 0.98, 0.04, 1.00
 \end{verbatim}
 %
-GEMMA codes alleles exactly as provided in the mean genotype file, and
+GEMMA codes alleles exactly as provided in the BIMBAM mean genotype file, and
 ignores the allele types in the second and third columns. Therefore,
 the minor allele is the effect allele only if one codes minor allele
-as 1 and major allele as 0.
+as 2 and major allele as 0.
 
 Missing genotypes are represented as ``NA'' values.
 
-- 
cgit v1.2.3

