From 2701a364228d91ba2c52f511ad6619d070e2235b Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Sat, 4 Jan 2025 01:59:26 -0600
Subject: Show checkpoints passed with -debug switch

---
 doc/code/pangemma.md | 14 ++++++++++++++
 1 file changed, 14 insertions(+)

(limited to 'doc/code')

diff --git a/doc/code/pangemma.md b/doc/code/pangemma.md
index d65245e..223e2ae 100644
--- a/doc/code/pangemma.md
+++ b/doc/code/pangemma.md
@@ -204,6 +204,20 @@ multiple outputs - in that case we may add filenames. And exits with:
 **** Checkpoint reached: read-geno-file (normal exit)
 ```
 
+# List check points
+
+When you compile PanGEMMA with debug information
+
+```
+make debug
+```
+
+and run a computation with the '-debug' switch it should output the check-points it passes. You should see something like
+
+```
+**** DEBUG: checkpoint read-geno-file passed with ./example/mouse_hs1940.geno.txt.gz in src/gemma_io.cpp at line 874 in ReadFile_geno
+```
+
 # Other
 
 ## Example
-- 
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