From ff1252fe3db1ba639fe148f45b0408a4f182da0d Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Mon, 14 Aug 2017 07:43:07 +0000
Subject: Tests and fixes
 https://github.com/genetics-statistics/GEMMA/issues/26

---
 INSTALL.md | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

(limited to 'INSTALL.md')

diff --git a/INSTALL.md b/INSTALL.md
index 2c8e830..d373dc3 100644
--- a/INSTALL.md
+++ b/INSTALL.md
@@ -14,7 +14,7 @@ GEMMA runs on Linux and MAC OSX and the runtime has the following
 dependencies:
 
 * C++ tool chain >= 4.9
-* GNU Science library (GSL) 1.x (does not currently work with GSL >= 2).
+* GNU Science library (GSL) 1.x (GEMMA does not currently work with GSL >= 2).
 * blas/openblas
 * lapack
 * [Eigen3 library](http://eigen.tuxfamily.org/dox/)
@@ -67,6 +67,10 @@ work
 
 	make EIGEN_INCLUDE_PATH=~/.guix-profile/include/eigen3 FORCE_DYNAMIC=1 WITH_OPENBLAS=1 DEBUG=1
 
+another example overriding optimization and LIB flags (so as to link against gslv1) would be
+
+    make EIGEN_INCLUDE_PATH=~/.guix-profile/include/eigen3 WITH_OPENBLAS=1 DEBUG=1 FORCE_DYNAMIC=1 GCC_FLAGS="-O3" LIBS="$HOME/opt/gsl1/lib/libgsl.a $HOME/opt/gsl1/lib/libgslcblas.a -L$HOME/.guix-profile/lib -pthread -llapack -lblas -lz"
+
 to run GEMMA tests
 
 	time make check
-- 
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