From 10f82cd2aa24abfbab7068fd062cc43429070f60 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Fri, 7 Jul 2017 07:28:04 +0000 Subject: Install doc --- INSTALL.md | 40 ++++++++++++++++++++++++++++++++++++++++ 1 file changed, 40 insertions(+) create mode 100644 INSTALL.md (limited to 'INSTALL.md') diff --git a/INSTALL.md b/INSTALL.md new file mode 100644 index 0000000..dd6bb2a --- /dev/null +++ b/INSTALL.md @@ -0,0 +1,40 @@ +# INSTALL GEMMA: Genome-wide Efficient Mixed Model Association + +## Check version + +Simply run gemma once installed + + gemma + +and it should give you the version. + +## GEMMA dependencies + +GEMMA runs on Linux and MAC OSX and the runtime has the following +dependencies: + +* C++ tool chain +* GNU Science library (GSL) +* blas +* [Eigen library](http://eigen.tuxfamily.org/dox/) +* zlib + +## Install GEMMA + +### Bioconda + +Recent versions of GEMMA can be installed with +[BioConda](http://ddocent.com/bioconda/) without root permissions using the following +command + + conda install gemma + +### GNU Guix + +The GNU Guix package manager can install recent versions of GEMMA +using the following command + + guix package -i gemma + + +### Install from source -- cgit v1.2.3