Auspice fork from github of https://github.com/urbanslug/auspice
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# Configuration file for the Sphinx documentation builder.
#
# This file only contains a selection of the most common options. For a full
# list see the documentation:
# https://www.sphinx-doc.org/en/master/usage/configuration.html
# -- Path setup --------------------------------------------------------------
# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#
# import os
# import sys
# sys.path.insert(0, os.path.abspath('.'))
# -- Project information -----------------------------------------------------
project = 'Auspice'
copyright = '2020, James Hadfield, Trevor Bedford and Richard Neher'
author = 'James Hadfield, Trevor Bedford and Richard Neher'
# -- General configuration ---------------------------------------------------
# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
'recommonmark',
'sphinx.ext.intersphinx',
'sphinx_markdown_tables',
'sphinxarg.ext',
'sphinx.ext.autodoc'
]
# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']
# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This pattern also affects html_static_path and html_extra_path.
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store', 'README.md',
'narratives',
'contributing',
]
# -- Options for HTML output -------------------------------------------------
# The theme to use for HTML and HTML Help pages. See the documentation for
# a list of builtin themes.
#
html_theme = 'nextstrain-sphinx-theme'
# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']
html_theme_options = {
'logo_only': False, # if True, don't display project name at top of the sidebar
'collapse_navigation': False, # if True, no [+] icons in sidebar
'titles_only': True, # if True, page subheadings not included in nav
}
# -- Cross-project references ------------------------------------------------
intersphinx_mapping = {
'docs.nextstrain.org': ('https://docs.nextstrain.org/en/latest/', None),
}