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changelog & rebuild docs

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james hadfield 2 years ago
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  1. 7
      CHANGELOG.md
  2. 16
      docs/releases/changelog.html
  3. 16
      docs/releases/changelog/index.html
  4. 2
      docs/server/api.html
  5. 2
      docs/server/api/index.html

7
CHANGELOG.md

@ -3,14 +3,15 @@ title: Changelog
---
## version 2.17.2 - 2020/07/13
* (Bugfix) Send error messages in the (HTTP) response body, not the status line.
See [PR 1181](https://github.com/nextstrain/auspice/pull/1181).
## version 2.17.1 - 2020/06/25
* (Bugfix) Metadata from drag-and-drop CSVs now shows up in the color-by menu.
See [PR 1177](https://github.com/nextstrain/auspice/pull/1177).
## version 2.17.0 - 2020/06/19
* You can now toggle whether the data in the frequencies panel is normalized.
See [PR 1158](https://github.com/nextstrain/auspice/pull/1158).
* You can now set the starting state of the transmissions-line toggle via the JSON or a URL query.

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docs/server/api.html

@ -173,4 +173,4 @@ Each object has properties</p>
<li><code>dataset</code> -- the dataset associated with this block</li>
<li><code>query</code> -- the query associated with this block</li>
</ul>
</span></div></article></div><div class="docLastUpdate"><em>Last updated on 3/21/2020</em></div><div class="docs-prevnext"><a class="docs-prev button" href="/auspice/server/introduction"><span class="arrow-prev"></span><span>Auspice servers</span></a><a class="docs-next button" href="/auspice/server/authentication"><span>Authentication</span><span class="arrow-next"></span></a></div></div></div><nav class="onPageNav"><ul class="toc-headings"><li><a href="#auspice-client-requests">Auspice client requests</a><ul class="toc-headings"><li><a href="#charon-getavailable"><code>/charon/getAvailable</code></a></li><li><a href="#charon-getdataset"><code>/charon/getDataset</code></a></li><li><a href="#charon-getnarrative"><code>/charon/getNarrative</code></a></li></ul></li><li><a href="#suppling-custom-handlers-to-the-auspice-server">Suppling custom handlers to the Auspice server</a></li><li><a href="#importing-code-from-auspice">Importing code from Auspice</a><ul class="toc-headings"><li><a href="#convertfromv1"><code>convertFromV1</code></a></li><li><a href="#parsenarrativefile"><code>parseNarrativeFile</code></a></li></ul></li></ul></nav></div><footer class="nav-footer" id="footer"><section class="sitemap"><div><a href="/auspice/"><img style="padding-left:20px" src="/auspice/img/logo-light.svg" alt="Auspice" width="66" height="58"/></a></div><div><h5>External Links</h5><a href="https://github.com/nextstrain/auspice">GitHub repo</a><a href="https://www.npmjs.com/package/auspice">NPM package</a><a href="https://nextstrain.org">Nextstrain</a></div><div><h5>Contact Us</h5><a href="mailto:hello@nextstrain.org">email</a><a href="https://twitter.com/hamesjadfield">twitter</a></div></section><section class="copyright">Website built by <a href="https://twitter.com/hamesjadfield">James Hadfield</a> using <a href="https://docusaurus.io">Docusaurus</a></section><section class="copyright">If you use auspice, please cite <a href="https://doi.org/10.1093/bioinformatics/bty407">Hadfield et al., 2018</a></section><section class="copyright">Copyright © 2014-2020 Richard Neher &amp; Trevor Bedford</section></footer></div></body></html>
</span></div></article></div><div class="docLastUpdate"><em>Last updated on 10/07/2020</em></div><div class="docs-prevnext"><a class="docs-prev button" href="/auspice/server/introduction"><span class="arrow-prev"></span><span>Auspice servers</span></a><a class="docs-next button" href="/auspice/server/authentication"><span>Authentication</span><span class="arrow-next"></span></a></div></div></div><nav class="onPageNav"><ul class="toc-headings"><li><a href="#auspice-client-requests">Auspice client requests</a><ul class="toc-headings"><li><a href="#charon-getavailable"><code>/charon/getAvailable</code></a></li><li><a href="#charon-getdataset"><code>/charon/getDataset</code></a></li><li><a href="#charon-getnarrative"><code>/charon/getNarrative</code></a></li></ul></li><li><a href="#suppling-custom-handlers-to-the-auspice-server">Suppling custom handlers to the Auspice server</a></li><li><a href="#importing-code-from-auspice">Importing code from Auspice</a><ul class="toc-headings"><li><a href="#convertfromv1"><code>convertFromV1</code></a></li><li><a href="#parsenarrativefile"><code>parseNarrativeFile</code></a></li></ul></li></ul></nav></div><footer class="nav-footer" id="footer"><section class="sitemap"><div><a href="/auspice/"><img style="padding-left:20px" src="/auspice/img/logo-light.svg" alt="Auspice" width="66" height="58"/></a></div><div><h5>External Links</h5><a href="https://github.com/nextstrain/auspice">GitHub repo</a><a href="https://www.npmjs.com/package/auspice">NPM package</a><a href="https://nextstrain.org">Nextstrain</a></div><div><h5>Contact Us</h5><a href="mailto:hello@nextstrain.org">email</a><a href="https://twitter.com/hamesjadfield">twitter</a></div></section><section class="copyright">Website built by <a href="https://twitter.com/hamesjadfield">James Hadfield</a> using <a href="https://docusaurus.io">Docusaurus</a></section><section class="copyright">If you use auspice, please cite <a href="https://doi.org/10.1093/bioinformatics/bty407">Hadfield et al., 2018</a></section><section class="copyright">Copyright © 2014-2020 Richard Neher &amp; Trevor Bedford</section></footer></div></body></html>

2
docs/server/api/index.html

@ -173,4 +173,4 @@ Each object has properties</p>
<li><code>dataset</code> -- the dataset associated with this block</li>
<li><code>query</code> -- the query associated with this block</li>
</ul>
</span></div></article></div><div class="docLastUpdate"><em>Last updated on 3/21/2020</em></div><div class="docs-prevnext"><a class="docs-prev button" href="/auspice/server/introduction"><span class="arrow-prev"></span><span>Auspice servers</span></a><a class="docs-next button" href="/auspice/server/authentication"><span>Authentication</span><span class="arrow-next"></span></a></div></div></div><nav class="onPageNav"><ul class="toc-headings"><li><a href="#auspice-client-requests">Auspice client requests</a><ul class="toc-headings"><li><a href="#charon-getavailable"><code>/charon/getAvailable</code></a></li><li><a href="#charon-getdataset"><code>/charon/getDataset</code></a></li><li><a href="#charon-getnarrative"><code>/charon/getNarrative</code></a></li></ul></li><li><a href="#suppling-custom-handlers-to-the-auspice-server">Suppling custom handlers to the Auspice server</a></li><li><a href="#importing-code-from-auspice">Importing code from Auspice</a><ul class="toc-headings"><li><a href="#convertfromv1"><code>convertFromV1</code></a></li><li><a href="#parsenarrativefile"><code>parseNarrativeFile</code></a></li></ul></li></ul></nav></div><footer class="nav-footer" id="footer"><section class="sitemap"><div><a href="/auspice/"><img style="padding-left:20px" src="/auspice/img/logo-light.svg" alt="Auspice" width="66" height="58"/></a></div><div><h5>External Links</h5><a href="https://github.com/nextstrain/auspice">GitHub repo</a><a href="https://www.npmjs.com/package/auspice">NPM package</a><a href="https://nextstrain.org">Nextstrain</a></div><div><h5>Contact Us</h5><a href="mailto:hello@nextstrain.org">email</a><a href="https://twitter.com/hamesjadfield">twitter</a></div></section><section class="copyright">Website built by <a href="https://twitter.com/hamesjadfield">James Hadfield</a> using <a href="https://docusaurus.io">Docusaurus</a></section><section class="copyright">If you use auspice, please cite <a href="https://doi.org/10.1093/bioinformatics/bty407">Hadfield et al., 2018</a></section><section class="copyright">Copyright © 2014-2020 Richard Neher &amp; Trevor Bedford</section></footer></div></body></html>
</span></div></article></div><div class="docLastUpdate"><em>Last updated on 10/07/2020</em></div><div class="docs-prevnext"><a class="docs-prev button" href="/auspice/server/introduction"><span class="arrow-prev"></span><span>Auspice servers</span></a><a class="docs-next button" href="/auspice/server/authentication"><span>Authentication</span><span class="arrow-next"></span></a></div></div></div><nav class="onPageNav"><ul class="toc-headings"><li><a href="#auspice-client-requests">Auspice client requests</a><ul class="toc-headings"><li><a href="#charon-getavailable"><code>/charon/getAvailable</code></a></li><li><a href="#charon-getdataset"><code>/charon/getDataset</code></a></li><li><a href="#charon-getnarrative"><code>/charon/getNarrative</code></a></li></ul></li><li><a href="#suppling-custom-handlers-to-the-auspice-server">Suppling custom handlers to the Auspice server</a></li><li><a href="#importing-code-from-auspice">Importing code from Auspice</a><ul class="toc-headings"><li><a href="#convertfromv1"><code>convertFromV1</code></a></li><li><a href="#parsenarrativefile"><code>parseNarrativeFile</code></a></li></ul></li></ul></nav></div><footer class="nav-footer" id="footer"><section class="sitemap"><div><a href="/auspice/"><img style="padding-left:20px" src="/auspice/img/logo-light.svg" alt="Auspice" width="66" height="58"/></a></div><div><h5>External Links</h5><a href="https://github.com/nextstrain/auspice">GitHub repo</a><a href="https://www.npmjs.com/package/auspice">NPM package</a><a href="https://nextstrain.org">Nextstrain</a></div><div><h5>Contact Us</h5><a href="mailto:hello@nextstrain.org">email</a><a href="https://twitter.com/hamesjadfield">twitter</a></div></section><section class="copyright">Website built by <a href="https://twitter.com/hamesjadfield">James Hadfield</a> using <a href="https://docusaurus.io">Docusaurus</a></section><section class="copyright">If you use auspice, please cite <a href="https://doi.org/10.1093/bioinformatics/bty407">Hadfield et al., 2018</a></section><section class="copyright">Copyright © 2014-2020 Richard Neher &amp; Trevor Bedford</section></footer></div></body></html>
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