From 5c785d70a310544b35bff69878e80c7138ac06d0 Mon Sep 17 00:00:00 2001
From: Efraim Flashner
Date: Tue, 15 Dec 2020 10:57:25 +0200
Subject: gn: rust-handlegraph-0.3, rust-ndarray-0.12 upstreamed

---
 gn/packages/crates-io.scm   | 70 ---------------------------------------------
 gn/packages/genenetwork.scm |  1 -
 2 files changed, 71 deletions(-)
 delete mode 100644 gn/packages/crates-io.scm

(limited to 'gn')

diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm
deleted file mode 100644
index 2c95366..0000000
--- a/gn/packages/crates-io.scm
+++ /dev/null
@@ -1,70 +0,0 @@
-(define-module (gn packages crates-io)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (gnu packages)
-  #:use-module (guix packages)
-  #:use-module (guix download)
-  #:use-module (guix utils)
-  #:use-module (guix build-system cargo)
-  #:use-module (gnu packages crates-io)
-  #:use-module (gnu packages rust))
-
-;; Please keep these packages sorted alphabetically
-
-(define-public rust-handlegraph-0.3
-  (package
-    (name "rust-handlegraph")
-    (version "0.3.0")
-    (source
-      (origin
-        (method url-fetch)
-        (uri (crate-uri "handlegraph" version))
-        (file-name
-         (string-append name "-" version ".tar.gz"))
-        (sha256
-         (base32
-          "1sj100w4lpj7798pws85qrfrzsily5hhzh6j118rwf56sgic1yml"))))
-    (build-system cargo-build-system)
-    (arguments
-     `(#:rust ,rust-1.42
-       #:cargo-inputs
-       (("rust-bstr" ,rust-bstr-0.2)
-        ("rust-gfa" ,rust-gfa-0.6))))
-    (home-page "https://github.com/chfi/rs-handlegraph")
-    (synopsis "Library for use in variation graphs")
-    (description
-     "This package provides a Rust implementation of VG handle graph.")
-    (license license:expat)))
-
-(define-public rust-ndarray-0.12
-  (package
-    (name "rust-ndarray")
-    (version "0.12.1")
-    (source
-      (origin
-        (method url-fetch)
-        (uri (crate-uri "ndarray" version))
-        (file-name (string-append name "-" version ".crate"))
-        (sha256
-         (base32
-          "0a5rfwcbqnvbwi3nw5sfz6kf0flhmjxs64s0b4kxc6lhmyl81wvw"))))
-    (build-system cargo-build-system)
-    (arguments
-     `(#:skip-build? #t
-       #:cargo-inputs
-       (("rust-itertools" ,rust-itertools-0.7)
-        ("rust-matrixmultiply" ,rust-matrixmultiply-0.1)
-        ("rust-num-complex" ,rust-num-complex-0.2)
-        ;("rust-blas-src" ,rust-blas-src-0.2)
-        ("rust-cblas-sys" ,rust-cblas-sys-0.1)
-        ("rust-rustc-serialize" ,rust-rustc-serialize-0.3)
-        ("rust-serde" ,rust-serde-1))
-       #:cargo-development-inputs
-       (("rust-defmac" ,rust-defmac-0.1)
-        ("rust-quickcheck" ,rust-quickcheck-0.7)
-        ("rust-rawpointer" ,rust-rawpointer-0.1))))
-    (home-page "https://github.com/rust-ndarray/ndarray")
-    (synopsis "n-dimensional container for general elements and for numerics")
-    (description "@code{ndarray} implements an n-dimensional container for
-general elements and for numerics.")
-    (license (list license:asl2.0
-                   license:expat))))
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index fb9af1d..4173157 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -43,7 +43,6 @@
   #:use-module (past packages python)
   #:use-module (gn packages bioinformatics)
   #:use-module (gn packages twint)
-  #:use-module (gn packages crates-io)
   #:use-module (gn packages databases)
   #:use-module (gn packages elixir)
   #:use-module (gn packages gemma)
-- 
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