From 3deb5c8f39442e39e774ce9c205d3946536c5367 Mon Sep 17 00:00:00 2001
From: pjotrp
Date: Mon, 23 Oct 2017 16:32:00 +0000
Subject: Renamed plink-ng package since it went into mainline

---
 gn/packages/bioinformatics.scm | 4 ++--
 gn/packages/genenetwork.scm    | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

(limited to 'gn')

diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index dffa11e..56ff4ab 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -753,10 +753,10 @@ subsequent visualization, annotation and storage of results.")
     ;; LGPLv2.1+
     (license (list license:gpl2 license:lgpl2.1+))))
 
-(define-public plink-ng
+(define-public plink-ng-gn
   (let ((commit "5d1db4313ba0cc976562da233db4aced78975d10"))
   (package
-    (name "plink-ng")
+    (name "plink-ng-gn")
     (version (string-append "1.90b3-" commit )) ; Aug 11, 2016
     (source (origin
              (method git-fetch)
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 5f119a7..514a85c 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -193,7 +193,7 @@ location of a putative QTL.")
               ("gemma-git-gn2" ,gemma-git-gn2)
               ("gemma-wrapper" ,gemma-wrapper)
               ("genenetwork2-files-small" ,genenetwork2-files-small)
-              ("plink-ng" ,plink-ng)
+              ("plink-ng-gn" ,plink-ng-gn)
               ("pylmm-gn2" ,pylmm-gn2)
               ("nginx" ,nginx)
               ("python2-flask" ,python2-flask)
@@ -248,7 +248,7 @@ location of a putative QTL.")
                       (let* (
                              (datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2" ))
                              (pylmmcmd (string-append (assoc-ref inputs "pylmm-gn2") "/bin/pylmm_redis"))
-                             (plink2cmd (string-append (assoc-ref inputs "plink-ng") "/bin/plink2"))
+                             (plink2cmd (string-append (assoc-ref inputs "plink-ng-gn") "/bin/plink2"))
                              (gemmacmd (string-append (assoc-ref inputs "gemma-git-gn2") "/bin/gemma"))
                              )
 
-- 
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