From 3414d825a9799f30d92e5188378cb7ad69db0eb0 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Fri, 8 Mar 2024 02:55:29 +0300
Subject: gn-uploader: Update package definition

---
 gn/packages/genenetwork.scm | 85 +++++++++++++++++++++++----------------------
 1 file changed, 44 insertions(+), 41 deletions(-)

(limited to 'gn')

diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 5298490..dae4b54 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -345,47 +345,50 @@
        (description "Genenetwork installation sumo.")
        (license license:agpl3+))))
 
-(define-public gnqc-py
-  (package
-    (name "gnqc-py")
-    (version "0.0.1")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-	     (url "https://gitlab.com/fredmanglis/gnqc_py.git")
-	     (commit "c81a3d948b3bc0db20a530fa1aa428b35b5d6145")))
-       (hash
-	(content-hash
-	 (base32
-	  "1101pql7zpijn36i9phcakfx1r5dcvdf6ix0v4ndjzmzx3d0xyi2")))))
-    (build-system python-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-	  (replace 'check
-	    (lambda* (#:key tests? #:allow-other-keys)
-	      (when tests?
-		(invoke "pytest" "-k" "unit_test")))))))
-    (native-inputs
-     `(("python-mypy" ,python-mypy)
-       ("python-pylint" ,python-pylint)
-       ("python-pytest" ,python-pytest)
-       ("python-hypothesis" ,python-hypothesis)))
-    (propagated-inputs
-     `(("gunicorn" ,gunicorn)
-       ("python-redis" ,python-redis)
-       ("python-flask" ,python-flask)
-       ("python-pyyaml" ,python-pyyaml)
-       ("python-jsonpickle" ,python-jsonpickle)
-       ("python-mysqlclient" ,python-mysqlclient)))
-    (synopsis "GeneNetwork Quality Control Application")
-    (description
-     "GeneNetwork qc is a quality control application for the data files that
- eventually are used to add to the data in the GeneNetwork project.")
-    (home-page "https://gitlab.com/fredmanglis/gnqc_py")
-    (license license:agpl3+)))
+(define-public gn-uploader
+  (let ((commit "6ced7085193affa636f229e72dc19175a3a06cfe")
+	(version "0.0.1"))
+    (package
+      (name "gn-uploader")
+      (version (string-append version (string-take commit 8)))
+      (source
+       (origin
+	 (method git-fetch)
+	 (uri (git-reference
+	       (url "https://git.genenetwork.org/gn-uploader")
+	       (commit commit)))
+	 (hash
+	  (content-hash
+	   (base32
+	    "09sy7kxdrf44m2yr4cqn0nx070mdnqb76888ghrwpqzgd2phfhjp")))))
+      (build-system python-build-system)
+      (arguments
+       (list
+	#:phases
+	#~(modify-phases %standard-phases
+	    (replace 'check
+	      (lambda* (#:key tests? #:allow-other-keys)
+		(when tests?
+		  (invoke "pytest" "-m" "unit_test")))))))
+      (native-inputs
+       `(("python-mypy" ,python-mypy)
+	 ("python-pylint" ,python-pylint)
+	 ("python-pytest" ,python-pytest)
+	 ("python-hypothesis" ,python-hypothesis)))
+      (propagated-inputs
+       `(("gunicorn" ,gunicorn)
+	 ("python-redis" ,python-redis)
+	 ("python-flask" ,python-flask)
+	 ("python-pyyaml" ,python-pyyaml)
+	 ("python-jsonpickle" ,python-jsonpickle)
+	 ("python-mysqlclient" ,python-mysqlclient)))
+      (synopsis "GeneNetwork Quality Control Application")
+      (description
+       "gn-uploader is a service allowing upload of new data into GeneNetwork,
+ that does quality control for the data files that is being uploaded to ensure
+ it fulfils all conditions before it can be accepted.")
+      (home-page "https://git.genenetwork.org/gn-uploader")
+      (license license:agpl3+))))
 
 (define-public gn-auth
   (package
-- 
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