From 1e17bd966f2d03287208000d5da08dc0b6947f61 Mon Sep 17 00:00:00 2001
From: pjotrp
Date: Sat, 13 Feb 2016 16:53:55 +0100
Subject: More packages

---
 gn/packages/bioinformatics.scm |  5 ++++
 gn/packages/python.scm         | 59 ++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 64 insertions(+)

(limited to 'gn')

diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 35ff166..2a6aacc 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -236,15 +236,20 @@ confidence region for the location of a putative QTL.")
               ("python2-htmlgen-gn" ,python2-htmlgen-gn)
               ("python2-jinja2" ,python2-jinja2)
               ("python2-sqlalchemy" ,python2-sqlalchemy)
+              ("python2-flask-sqlalchemy" ,python2-flask-sqlalchemy)
               ("python2-setuptools" ,python2-setuptools)
               ("python2-scipy" ,python2-scipy)
               ;; looks like python-numarray is not needed
               ("python2-mysqlclient" ,python2-mysqlclient)
+              ("python2-numarray" ,python2-numarray)
               ("python2-numpy" ,python2-numpy)
               ("python2-pandas" ,python2-pandas)
               ("python2-passlib" ,python2-passlib)
+              ("python2-piddle" ,python2-piddle)
               ("python2-redis" ,python2-redis)
               ("python2-requests" ,python2-requests)
+              ("python2-rpy2" ,python2-rpy2)
+              ("python2-scipy" ,python2-scipy)
               ("python2-simplejson" ,python2-simplejson)
               ("python2-pyyaml" ,python2-pyyaml)
               ("python-xlsxwriter" ,python-xlsxwriter)
diff --git a/gn/packages/python.scm b/gn/packages/python.scm
index 09251d7..70d10f9 100644
--- a/gn/packages/python.scm
+++ b/gn/packages/python.scm
@@ -79,6 +79,34 @@
 (define-public python2-flask
   (package-with-python2 python-flask))
 
+(define-public python-flask-sqlalchemy
+  (package
+   (name "python-flask-sqlalchemy")
+   (version "2.1")
+   (source
+    (origin
+     (method url-fetch)
+     (uri (pypi-uri "Flask-SQLAlchemy" version))
+     (sha256
+      (base32
+       "1i9ps5d5snih9xlqhrvmi3qfiygkmqzxh92n25kj4pf89kj4s965"))))
+   (build-system python-build-system)
+   (inputs
+    `(("python-setuptools" ,python-setuptools)
+      ("python-flask" ,python-flask)
+      ("python-sqlalchemy" ,python-sqlalchemy)
+      ))
+   (home-page
+    "http://github.com/mitsuhiko/flask-sqlalchemy")
+   (synopsis
+    "Adds SQLAlchemy support to your Flask application")
+   (description
+    "Adds SQLAlchemy support to your Flask application")
+   (license license:bsd-3)))
+
+(define-public python2-flask-sqlalchemy
+  (package-with-python2 python-flask-sqlalchemy))
+
 (define-public python-xlsxwriter
 (package
   (name "python-xlsxwriter")
@@ -329,6 +357,37 @@ project)")
   (description #f)
   (license #f)))
 
+(define-public python2-piddle
+  (package
+    (name "python2-piddle")
+    (version "1.0.15")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             ;; http://sourceforge.net/projects/numpy/files/Old%20Numarray/1.5.2/numarray-1.5.2.tar.gz/download
+             "mirror://sourceforge/piddle/piddle-" version ".zip"
+             ))
+       ;; (file-name (string-append name "-" version ".zip"))
+       (sha256
+        (base32
+         "0jaxfsrcgqb5cf2wznxnpdws5khlrdixmg85lrhq2zl9cy6dfdya"))))
+    (native-inputs
+     `(("unzip" ,unzip)))
+
+    (build-system python-build-system)
+    ;; (native-inputs
+    ;; `(("python-setuptools" ,python-setuptools)))
+    (arguments
+     `(#:python ,python-2
+       #:tests? #f
+       ))   ; no 'setup.py test' really!
+    (home-page "http://www.numpy.org/")
+    (synopsis "Canvas drawing library for python2 (old!)")
+    (description #f)
+    (license #f)))
+
+
 (define-public python2-numarray
   (package
     (name "python2-numarray")
-- 
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