From 1a9bb9adaf364de104d7f6d9a7aa1498777bc3d2 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Thu, 21 Nov 2024 11:55:39 -0600
Subject: gn-libs (gn packages genenetwork): New package.

Add a new package named "gn-libs".
---
 gn/packages/genenetwork.scm | 39 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 39 insertions(+)

(limited to 'gn')

diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index e268696..6e0c540 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -11,6 +11,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
+  #:use-module (guix build-system pyproject)
   #:use-module (guix graph)
   #:use-module (guix scripts graph)
   #:use-module (guix store)
@@ -533,6 +534,44 @@
       (description "Authentication and Authorisation server for GeneNetwork services.")
       (license license:agpl3+))))
 
+
+(define-public gn-libs
+  (let ((commit "eb99148991a5869cf10c241aeff6c47708986a3a")
+        (revision "01"))
+    (package
+      (name "gn-libs")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://git.genenetwork.org/gn-libs")
+               (commit commit)))
+         (hash
+          (content-hash
+           (base32
+            "1lbvpn0ddsbj8xvnkzs352n7dg8drpvgx4j9xsxb24ny1f2ij323")))))
+      (build-system pyproject-build-system)
+      (arguments
+       (list
+        #:phases
+        #~(modify-phases %standard-phases
+            (replace 'check
+              (lambda* (#:key tests? #:allow-other-keys)
+                (when tests?
+                  (invoke "pytest" "-k" "unit_test")))))))
+      (native-inputs
+       (list python-mypy
+             python-pylint
+             python-pytest))
+      (propagated-inputs
+       (list python-mysqlclient))
+      (home-page "https://github.com/genenetwork/gn-libs")
+      (synopsis "Tools/utilities for GeneNetwork projects.")
+      (description "A collection of tools and utilities used across multiple
+GeneNetwork projects.")
+      (license license:agpl3+))))
+
 ;; ./pre-inst-env guix download http://files.genenetwork.org/raw_database/db_webqtl_s.zip
 ;; 0sscjh0wml2lx0mb43vf4chg9gpbfi7abpjxb34n3kyny9ll557x
 
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