From 8885768936858286babae788a5dcfb01c2cad0a8 Mon Sep 17 00:00:00 2001
From: Efraim Flashner
Date: Tue, 19 Sep 2023 19:00:45 +0300
Subject: gfaffix: Update to 0.1.5.

---
 gn/packages/bioinformatics.scm | 22 +++++-----------------
 gn/packages/crates-io.scm      |  4 ++--
 2 files changed, 7 insertions(+), 19 deletions(-)

(limited to 'gn/packages')

diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index db420b7..63934fc 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -469,7 +469,7 @@ reads.")
 (define-public gfaffix
   (package
     (name "gfaffix")
-    (version "0.1.3")
+    (version "0.1.5")
     (source
       (origin
         (method git-fetch)
@@ -478,12 +478,7 @@ reads.")
                (commit version)))
         (file-name (git-file-name name version))
         (sha256
-         (base32 "1biss5qv6ag1dfkn1nspwd528hpzgn8i4jydvbv2z7yv7sc685rh"))
-        (modules '((guix build utils)))
-        (snippet
-         '(begin
-            (substitute* "Cargo.toml"
-              (("^handlegraph.*") "handlegraph = \"0.7\"\n"))))))
+         (base32 "181jxl8ldj39jgscyqzhz4l4k5kxj1j9hvzi8dxj59h2zzznb0kb"))))
     (build-system cargo-build-system)
     (arguments
      `(#:install-source? #f
@@ -491,19 +486,12 @@ reads.")
        (("rust-clap" ,rust-clap-3)
         ("rust-rustc-hash" ,rust-rustc-hash-1)
         ("rust-regex" ,rust-regex-1)
-        ("rust-handlegraph" ,rust-handlegraph-0.7)
+        ("rust-handlegraph" ,rust-handlegraph-0.7.0-alpha.9)
         ("rust-gfa" ,rust-gfa-0.10)
         ("rust-quick-csv", rust-quick-csv-0.1)
+        ("rust-rayon" ,rust-rayon-1)
         ("rust-log" ,rust-log-0.4)
-        ("rust-env-logger" ,rust-env-logger-0.7))
-       #:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'adjust-dependency-version
-           (lambda* (#:key inputs #:allow-other-keys)
-             (let ((handlebar-version ,(package-version rust-handlegraph-0.7)))
-               (substitute* "Cargo.toml"
-                 (("\"0.7\"")
-                  (string-append "{ version = \"" handlebar-version "\" }")))))))))
+        ("rust-env-logger" ,rust-env-logger-0.7))))
     (home-page "https://github.com/marschall-lab/GFAffix")
     (synopsis "Identify walk-preserving shared affixes in variation graphs")
     (description
diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm
index 7e74b60..a0e31ce 100644
--- a/gn/packages/crates-io.scm
+++ b/gn/packages/crates-io.scm
@@ -144,7 +144,7 @@ functions} for a collection of hashable objects.")
      "Library for working with graphs in the GFA (Graphical Fragment Assembly) format")
     (license license:expat)))
 
-(define-public rust-handlegraph-0.7
+(define-public rust-handlegraph-0.7.0-alpha.9
   (package
     (name "rust-handlegraph")
     (version "0.7.0-alpha.9")
@@ -180,7 +180,7 @@ functions} for a collection of hashable objects.")
 
 (define-public rust-handlegraph-0.3
   (package
-    (inherit rust-handlegraph-0.7)
+    (inherit rust-handlegraph-0.7.0-alpha.9)
     (name "rust-handlegraph")
     (version "0.3.0")
     (source (origin
-- 
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