From 69e630e4c878ab5cfa6ef8dcf9ac2f9442ef5c03 Mon Sep 17 00:00:00 2001
From: Efraim Flashner
Date: Wed, 4 Dec 2019 02:28:04 -0600
Subject: gn: Add r-qtl2.

---
 gn/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

(limited to 'gn/packages')

diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 4f133f8..a96abc2 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -11,6 +11,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system python)
+  #:use-module (guix build-system r)
   #:use-module (guix build-system trivial)
   #:use-module (guix build-system waf)
   #:use-module (gnu packages)
@@ -1134,3 +1135,32 @@ here}.")
     (synopsis "Efficient sequence alignment of full genomes")
     (description "MUMmer is a versatil alignment tool for DNA and protein sequences.")
     (license license:artistic2.0)))
+
+(define-public r-qtl2
+  (package
+    (name "r-qtl2")
+    (version "0.20")
+    (source (origin
+      (method git-fetch)
+      ;; Not yet available in cran.
+      (uri (git-reference
+             (url "https://github.com/rqtl/qtl2.git")
+             (commit version)))
+      (file-name (git-file-name name version))
+      (sha256
+       (base32 "0l1asr28q25jzbwrbg5490962sg3y4sjrd0qf09p78ws1aq8vfs0"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-data-table" ,r-data-table)
+       ("r-jsonlite" ,r-jsonlite)
+       ("r-rcpp" ,r-rcpp)
+       ("r-rcppeigen" ,r-rcppeigen)
+       ("r-rsqlite" ,r-rsqlite)
+       ("r-yaml" ,r-yaml)))
+    (home-page "https://kbroman.org/qtl2/")
+    (synopsis
+     "QTL analysis software for high-dimensional data and complex cross designs")
+    (description
+     "R/qtl2 (aka qtl2) is a reimplementation of the QTL analysis software
+R/qtl, to better handle high-dimensional data and complex cross designs.")
+    (license license:gpl3)))
-- 
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