From 09b92342689f5c31b3de7678bdcd3f108c6a4d31 Mon Sep 17 00:00:00 2001
From: pjotrp
Date: Thu, 5 Oct 2017 07:17:14 +0000
Subject: Added 3 Ruby packages

---
 gn/packages/ruby.scm | 69 ++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 69 insertions(+)

(limited to 'gn/packages/ruby.scm')

diff --git a/gn/packages/ruby.scm b/gn/packages/ruby.scm
index 58ea35b..091d0a9 100644
--- a/gn/packages/ruby.scm
+++ b/gn/packages/ruby.scm
@@ -271,3 +271,72 @@ a history.")
   (home-page
    "http://docs.seattlerb.org/mechanize/")
   (license expat)))
+
+
+(define-public ruby-bio-logger ; guix maybe ready
+(package
+  (name "ruby-bio-logger")
+  (version "1.0.1")
+  (source
+    (origin
+      (method url-fetch)
+      (uri (rubygems-uri "bio-logger" version))
+      (sha256
+        (base32
+          "02pylfy8nkdqzyzplvnhn1crzmfkj1zmi3qjhrj2f2imlxvycd28"))))
+  (build-system ruby-build-system)
+  (propagated-inputs `(("ruby-log4r" ,ruby-log4r)))
+  (arguments
+   `(#:tests? #f)) ;; no bundler
+  (synopsis "Log4r wrapper for BioRuby")
+  (description "Log4r wrapper for BioRuby")
+  (home-page
+    "https://github.com/pjotrp/bioruby-logger-plugin")
+  (license #f)))
+
+(define-public bio-table ; guix maybe ready
+(package
+  (name "bio-table")
+  (version "1.0.0")
+  (source
+    (origin
+      (method url-fetch)
+      (uri (rubygems-uri "bio-table" version))
+      (sha256
+        (base32
+          "1jlpls734kd41rffn2y2747nr14k5rwgaj2g3k48i9xgsfcmrn6r"))))
+  (build-system ruby-build-system)
+  (propagated-inputs
+    `(("ruby-bio-logger" ,ruby-bio-logger)))
+  (arguments
+   `(#:tests? #f)) ;; no bundler
+  (synopsis
+    "Functions and tools for tranforming and changing tab delimited and comma separated table files - useful for Excel sheets and SQL/RDF output")
+  (description
+    "Functions and tools for tranforming and changing tab delimited and comma separated table files - useful for Excel sheets and SQL/RDF output")
+  (home-page
+    "http://github.com/pjotrp/bioruby-table")
+  (license license:expat)))
+
+
+(define-public bio-vcf ; guix maybe ready
+(package
+  (name "bio-vcf")
+  (version "0.9.2")
+  (source
+    (origin
+      (method url-fetch)
+      (uri (rubygems-uri "bio-vcf" version))
+      (sha256
+        (base32
+          "1007bn0w8l11q867lxsyqnk0vgvv12skvk9gyglv7g44knr5vh4j"))))
+  (build-system ruby-build-system)
+  (arguments
+   `(#:tests? #f)) ;; no bundler/cucumber
+  (synopsis
+    "Smart lazy multi-threaded parser for VCF format with useful filtering and output rewriting (JSON, RDF etc.)")
+  (description
+    "Smart lazy multi-threaded parser for VCF format with useful filtering and output rewriting (JSON, RDF etc.)")
+  (home-page
+    "http://github.com/pjotrp/bioruby-vcf")
+  (license license:expat)))
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