From 0cc843925d59093b70490ccbca5e18bc4174de9c Mon Sep 17 00:00:00 2001
From: Efraim Flashner
Date: Wed, 14 Jun 2023 19:49:27 +0300
Subject: gn: genecup: Use correct python-h5py.

* gn/packages/python.scm (python-h5py-2): New variable.
* gn/packages/machine-learning.scm (tensorflow-native): Remove comments.
* gn/packages/ratspub.scm (use-corrected-inputs): New procedure.
(genecup-with-tensorflow-native, genecup-latest-with-tensorflow-native):
Use use-corrected-inputs.
---
 gn/packages/ratspub.scm | 12 ++++++++++--
 1 file changed, 10 insertions(+), 2 deletions(-)

(limited to 'gn/packages/ratspub.scm')

diff --git a/gn/packages/ratspub.scm b/gn/packages/ratspub.scm
index af64365..726bc0b 100644
--- a/gn/packages/ratspub.scm
+++ b/gn/packages/ratspub.scm
@@ -17,6 +17,7 @@
   #:use-module (gnu packages python-xyz)
   #:use-module (gn packages javascript)
   #:use-module (gn packages machine-learning)
+  #:use-module (gn packages python)
   #:use-module (gn packages web))
 
 (define-public ratspub
@@ -148,6 +149,13 @@ Association Studies}} catalog are also included in the search.  These
 gene-keyword relationships are presented as an interactive graph and a table.")
     (license license:expat)))
 
+(define use-corrected-inputs
+  (package-input-rewriting/spec
+    ;; Tensorflow-native provides much improved speeds. python-h5py@2 provides
+    ;; compatibility with our version of tensorflow.
+    `(("tensorflow" . ,(const tensorflow-native))
+      ("python-h5py" . ,(const python-h5py-2)))))
+
 (define-public ratspub-with-tensorflow-native
   (package
     (inherit
@@ -399,11 +407,11 @@ concepts and a list of keywords for each concept.")
 (define-public genecup-with-tensorflow-native
   (package
     (inherit
-      (tensowflow-native-instead-of-tensorflow genecup))
+      (use-corrected-inputs genecup))
     (name "genecup-with-tensorflow-native")))
 
 (define-public genecup-latest-with-tensorflow-native
   (package
     (inherit
-      (tensowflow-native-instead-of-tensorflow genecup-master))
+      (use-corrected-inputs genecup-master))
     (name "genecup-latest-with-tensorflow-native")))
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