From 01cbe5a2e9b682cac8862888d86b44078b7eac92 Mon Sep 17 00:00:00 2001
From: pjotrp
Date: Sat, 28 Aug 2021 09:04:23 +0200
Subject: Moved packages into past/genenetwork1 and packages/pangenome to
 reduce chance of breaking the main genenetwork packages.

---
 gn/packages/pangenome.scm | 51 +++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 51 insertions(+)
 create mode 100644 gn/packages/pangenome.scm

(limited to 'gn/packages/pangenome.scm')

diff --git a/gn/packages/pangenome.scm b/gn/packages/pangenome.scm
new file mode 100644
index 0000000..69e3d81
--- /dev/null
+++ b/gn/packages/pangenome.scm
@@ -0,0 +1,51 @@
+;; Bioinformatics module
+
+(define-module (gn packages pangenome)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix packages)
+  #:use-module (guix utils)
+  #:use-module (guix download)
+  #:use-module (guix git-download)
+  #:use-module (guix build-system cargo)
+  #:use-module (guix build-system gnu)
+  #:use-module (guix graph)
+  #:use-module (guix scripts graph)
+  #:use-module (guix store)
+  #:use-module (guix gexp)
+  #:use-module (gnu packages)
+  #:use-module (gnu packages base)
+  #:use-module (gnu packages crates-io)
+  #:use-module (gnu packages rust)
+  #:use-module (gnu packages version-control)
+  #:use-module (srfi srfi-1))
+
+
+(define-public gfautil
+  (package
+    (name "gfautil")
+    (version "0.1.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "gfautil" version))
+        (file-name
+         (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "0cgiis9v1nd4m7zxvgsz8jf8ijv4d8fa5wb7cpnjshksb8z7xh69"))))
+    (build-system cargo-build-system)
+    (arguments
+     `(#:cargo-inputs
+       (("rust-bstr" ,rust-bstr-0.2)
+        ("rust-clap" ,rust-clap-2)
+        ("rust-gfa" ,rust-gfa-0.6)
+        ("rust-handlegraph" ,rust-handlegraph-0.3)
+        ("rust-rayon" ,rust-rayon-1)
+        ("rust-serde" ,rust-serde-1)
+        ("rust-structopt" ,rust-structopt-0.3))))
+    (home-page "https://github.com/chfi/rs-gfa-utils")
+    (synopsis "Command line tools for working with GFA files")
+    (description
+     "This package provides command line tools for working with @acronym{GFA,
+Graphical Fragment Assembly} files and related formats.")
+    (license license:expat)))
-- 
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