From c8009a204cf8c049314b3dda94ac9673fbbb7418 Mon Sep 17 00:00:00 2001
From: Efraim Flashner
Date: Fri, 18 Oct 2019 06:40:20 -0500
Subject: gn: rust-qtlreaper: Manually provide dependencies.

* gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Manually
provide all the crates needed to build the package.
* gn/packages/crates.io.scm: Remove all unreferenced crates. Remove all
inputs for all crates.
---
 gn/packages/genenetwork.scm | 70 ++++++++++++++++++++++++++++++++++++++++++---
 1 file changed, 66 insertions(+), 4 deletions(-)

(limited to 'gn/packages/genenetwork.scm')

diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index b9ebcc4..836da8d 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -202,11 +202,73 @@ location of a putative QTL.")
       (arguments
        `(#:cargo-inputs
          (("rust-rand" ,rust-rand-0.6)
-          ("rust-structopt" ,rust-structopt)
+          ("rust-structopt" ,rust-structopt-0.2)
           ("rust-rayon" ,rust-rayon-1.0)
-          ("rust-serde" ,rust-serde)
-          ("rust-serde-json" ,rust-serde-json)
-          ("rust-ndarray" ,rust-ndarray))
+          ("rust-serde" ,rust-serde-1.0)
+          ("rust-serde-json" ,rust-serde-json-1.0)
+          ("rust-ndarray" ,rust-ndarray-0.12))
+         #:cargo-development-inputs
+         (("rust-ansi-term" ,rust-ansi-term-0.11)
+          ("rust-arrayvec" ,rust-arrayvec-0.4)
+          ("rust-atty" ,rust-atty-0.2)
+          ("rust-autocfg" ,rust-autocfg-0.1)
+          ("rust-bitflags" ,rust-bitflags-1.0)
+          ("rust-cfg-if" ,rust-cfg-if-0.1)
+          ("rust-clap" ,rust-clap-2.33)
+          ("rust-cloudabi" ,rust-cloudabi-0.0)
+          ("rust-crossbeam-deque" ,rust-crossbeam-deque-0.2)
+          ("rust-crossbeam-epoch" ,rust-crossbeam-epoch-0.3)
+          ("rust-crossbeam-utils" ,rust-crossbeam-utils-0.2)
+          ("rust-either" ,rust-either-1.5)
+          ("rust-fuchsia-cprng" ,rust-fuchsia-cprng-0.1)
+          ("rust-heck" ,rust-heck-0.3)
+          ("rust-itertools" ,rust-itertools-0.7)
+          ("rust-itoa" ,rust-itoa-0.4)
+          ("rust-lazy-static" ,rust-lazy-static-1.3)
+          ("rust-libc" ,rust-libc-0.2)
+          ("rust-maxtrixmultiply" ,rust-matrixmultiply-0.1)
+          ("rust-memoffset" ,rust-memoffset-0.2)
+          ("rust-nodrop" ,rust-nodrop-0.1)
+          ("rust-num-complex" ,rust-num-complex-0.2)
+          ("rust-num-cpus" ,rust-num-cpus-1.10)
+          ("rust-num-traits" ,rust-num-traits-0.2)
+          ("rust-numtoa" ,rust-numtoa-0.1)
+          ("rust-proc-macro2" ,rust-proc-macro2-0.4)
+          ("rust-quote" ,rust-quote-0.6)
+          ("rust-rand" ,rust-rand-0.6)
+          ("rust-rand-chacha" ,rust-rand-chacha-0.1)
+          ("rust-rand-core-0.4" ,rust-rand-core-0.4)
+          ("rust-rand-core-0.3" ,rust-rand-core-0.3)
+          ("rust-rand-hc" ,rust-rand-hc-0.1)
+          ("rust-rand-isaac" ,rust-rand-isaac-0.1)
+          ("rust-rand-jitter" ,rust-rand-jitter-0.1)
+          ("rust-rand-os" ,rust-rand-os-0.1)
+          ("rust-rand-pcg" ,rust-rand-pcg-0.1)
+          ("rust-rand-xorshift" ,rust-rand-xorshift-0.1)
+          ("rust-rawpointer" ,rust-rawpointer-0.1)
+          ("rust-rayon" ,rust-rayon-1.0)
+          ("rust-rayon-core" ,rust-rayon-core-1.4)
+          ("rust-rdrand" ,rust-rdrand-0.4)
+          ("rust-redox-syscall" ,rust-redox-syscall-0.1)
+          ("rust-redox-termios" ,rust-redox-termios-0.1)
+          ("rust-ryu" ,rust-ryu-1.0)
+          ("rust-scopeguard" ,rust-scopeguard-0.3)
+          ("rust-serde" ,rust-serde-1.0)
+          ("rust-serde-derive" ,rust-serde-derive-1.0)
+          ("rust-serde-json" ,rust-serde-json-1.0)
+          ("rust-strsim" ,rust-strsim-0.8)
+          ("rust-structopt" ,rust-structopt-0.2)
+          ("rust-structopt-derive" ,rust-structopt-derive-0.2)
+          ("rust-syn" ,rust-syn-0.15)
+          ("rust-termion" ,rust-termion-1.5)
+          ("rust-textwrap" ,rust-textwrap-0.11)
+          ("rust-unicode-segmentation" ,rust-unicode-segmentation-1.3)
+          ("rust-unicode-width" ,rust-unicode-width-0.1)
+          ("rust-unicode-xid" ,rust-unicode-xid-0.1)
+          ("rust-vec-map" ,rust-vec-map-0.8)
+          ("rust-winapi" ,rust-winapi-0.3)
+          ("rust-winapi-i686-pc-windows-gnu" ,rust-winapi-i686-pc-windows-gnu-0.4)
+          ("rust-winapi-x86-64-pc-windows-gnu" ,rust-winapi-x86-64-pc-windows-gnu-0.4))
          #:phases
          (modify-phases %standard-phases
            (add-after 'unpack 'update-test-data
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