From f643ef8969455a17e382ec4bc8e48e27e5a95957 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Tue, 22 Aug 2017 05:21:51 -0500
Subject: Updated gemma to latest

---
 gn/packages/gemma.scm | 17 +++++++++--------
 1 file changed, 9 insertions(+), 8 deletions(-)

(limited to 'gn/packages/gemma.scm')

diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm
index 69607b3..a1481cb 100644
--- a/gn/packages/gemma.scm
+++ b/gn/packages/gemma.scm
@@ -61,30 +61,30 @@
   #:use-module (gn packages shell)
   #:use-module (srfi srfi-1))
 
-(define-public gemma-git ; guix candidate
-  (let ((commit "c91dfaef84d08ce151eecca50bf8ffdaf4b327f6"))
+(define-public gemma-git-gn2 ; guix candidate
+  (let ((commit "48da44bf2da05f76008b083923ddf5701b9c029a"))
   (package
-    (name "gemma-git")
-    (version (string-append "0.97-pre-" (string-take commit 7)))
+    (name "gemma-git-gn2")
+    (version (string-append "0.97-gn2-" (string-take commit 7)))
     (source (origin
              (method git-fetch)
              (uri (git-reference
                    (url "https://github.com/genenetwork/GEMMA")
                    (commit commit)))
-             (file-name (string-append name "-" commit))
+             (file-name (string-append name "-" version))
              (sha256
               (base32
-               "1ix4p6av88i6jfv84v2qqcmdlnxznp64bm93avrrl68v04jq6psm"))))
+               "1bvf03aimk1nywv4z8dr75f2qi8mav346w787wzddckakn29yymb"))))
     (inputs `(
               ("gsl" ,gsl)
               ("eigen" ,eigen)
+              ("shunit2" ,shunit2)
               ("lapack" ,lapack)
               ("openblas" ,openblas)
               ("zlib" ,zlib)
               ))
     (native-inputs ; for running tests
      `(("perl" ,perl)
-       ("shunit2" ,shunit2)
        ("which" ,which)
        ))
 
@@ -96,6 +96,7 @@
                        (assoc-ref %build-inputs "eigen")
                        "/include/eigen3/")
         "FORCE_DYNAMIC=1"
+        "DEBUG=1"
         "WITH_OPENBLAS=1")
        #:phases
         ; "/include/eigen3/"
@@ -118,7 +119,7 @@ mixed model and some of its close relatives for genome-wide
 association studies (GWAS).")
     (license license:gpl3))))
 
-(define-public gemma
+(define-public gemma-gn2
   (package
    (name "gemma")
    (version "0.96")
-- 
cgit v1.2.3