From 37cb61531ac7868e6ad1b9a15dd01105e9d8f63d Mon Sep 17 00:00:00 2001
From: pjotrp
Date: Wed, 27 Dec 2017 11:57:13 +0000
Subject: GEMMA build for generic release

---
 gn/packages/gemma.scm | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

(limited to 'gn/packages/gemma.scm')

diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm
index fb9e2c7..aad5b67 100644
--- a/gn/packages/gemma.scm
+++ b/gn/packages/gemma.scm
@@ -234,6 +234,27 @@ association studies (GWAS).")
              ("openblas" ,openblas-haswell)
              ("zlib" ,zlib)
              ))
+    (arguments
+     `(#:make-flags
+       (list
+        (string-append "EIGEN_INCLUDE_PATH="
+                       (assoc-ref %build-inputs "eigen")
+                       "/include/eigen3/")
+        )
+       #:phases
+        ; "/include/eigen3/"
+        (modify-phases %standard-phases
+         (delete 'configure)
+         (add-before 'build 'bin-mkdir
+                     (lambda _
+                       (mkdir-p "bin")
+                       ))
+         (replace 'install
+                  (lambda* (#:key outputs #:allow-other-keys)
+                           (let ((out (assoc-ref outputs "out")))
+                             (install-file "bin/gemma" (string-append out "/bin"))))))
+       ; #:tests? #f
+       #:parallel-tests? #f))
    ))
 
 (define-public gemma-wrapper
-- 
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