From e40994928ba5679b15ad44ebf200624aa613e5e6 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Mon, 1 Dec 2025 21:10:56 +0000
Subject: gn: Add htslib-1.14.

htslib-1.14 was removed from Guix upstream.
---
 gn/packages/bioinformatics.scm | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)

(limited to 'gn/packages/bioinformatics.scm')

diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index e94be69..cf9cd4b 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -2980,6 +2980,25 @@ to the user.")
                  "http://www.kentinformatics.com/index.html"
                  "Free for universities and non-profit institutions.")))))
 
+(define htslib-1.14
+  (package/inherit htslib
+    (version "1.14")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://github.com/samtools/htslib/releases/download/"
+                    version "/htslib-" version ".tar.bz2"))
+              (sha256
+               (base32
+                "0pwk8yhhvb85mi1d2qhwsb4samc3rmbcrq7b1s0jz0glaa7in8pd"))))
+    (arguments
+     (substitute-keyword-arguments (package-arguments htslib)
+       ((#:configure-flags cf #~'())
+        #~(delete "--with-external-htscodecs" #$cf))))
+    (propagated-inputs
+     (modify-inputs (package-propagated-inputs htslib)
+       (delete "htscodecs")))))
+
 (define-public pbbam
   (package
     (name "pbbam")
-- 
cgit 1.4.1