From e13e3d6b32f1261f80f4e122d1c4a47785e0e4f6 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Tue, 11 Feb 2025 15:56:38 +0000
Subject: gn: pggb: Remove unused dependencies.

These dependencies are referred to in the documentation and put into
the Docker image, but are not actually used by pggb.

* gn/packages/bioinformatics.scm (pggb)[inputs]: Remove fastix,
mummer, pafplot and vcflib.
---
 gn/packages/bioinformatics.scm | 8 --------
 1 file changed, 8 deletions(-)

(limited to 'gn/packages/bioinformatics.scm')

diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index bfc0cdb..2e799ea 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -2635,11 +2635,8 @@ multiple sequence alignment.")
                                                "bedtools"
                                                "gfaffix"
                                                "htslib"
-                                               "fastix"
                                                "multiqc"
-                                               "mummer"
                                                "odgi"
-                                               "pafplot"
                                                "parallel"
                                                "pigz"
                                                "python"
@@ -2651,7 +2648,6 @@ multiple sequence alignment.")
                                                "smoothxg"
                                                "time"
                                                "vcfbub"
-                                               "vcflib"
                                                "vg"
                                                "wfmash"))))))
                           (list (string-append out "/bin/pggb")
@@ -2673,11 +2669,8 @@ multiple sequence alignment.")
              gfaffix
              guile-3.0      ; for wrap-script
              htslib         ; tabix
-             fastix
              multiqc
-             mummer
              odgi
-             pafplot
              parallel
              pigz
              python
@@ -2690,7 +2683,6 @@ multiple sequence alignment.")
              smoothxg
              time
              vcfbub
-             vcflib
              vg
              wfmash))
       (home-page "https://doi.org/10.1101/2023.04.05.535718")
-- 
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