From c2415bfa014892a56be9b621089a0a2ffab234f7 Mon Sep 17 00:00:00 2001
From: Efraim Flashner
Date: Tue, 19 Sep 2023 19:24:04 +0300
Subject: Add fastix

---
 gn/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

(limited to 'gn/packages/bioinformatics.scm')

diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 2b1d514..4b37c8f 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -548,6 +548,32 @@ remove these, as they provide little information for many downstream
 applications, such as haplotype panels or other imputation references.")
     (license license:expat)))
 
+(define-public fastix
+  (package
+    (name "fastix")
+    (version "0.1.0")
+    (source (origin
+              (method url-fetch)
+              (uri (crate-uri "fastix" version))
+              (file-name (string-append name "-" version ".tar.gz"))
+              (sha256
+               (base32 "1mzk65mg8vx0hz39xis6zqdmq56abhmza656gn9pgmlsn151gpx2"))))
+    (build-system cargo-build-system)
+    (arguments
+     `(#:install-source? #f
+       #:cargo-inputs
+       (("rust-clap" ,rust-clap-2))
+       #:cargo-development-inputs
+       (("rust-assert-cmd" ,rust-assert-cmd-0.12)
+        ("rust-predicates" ,rust-predicates-1))))
+    (home-page "https://github.com/ekg/fastix")
+    (synopsis "Prefix-renaming FASTA records")
+    (description "A command line tool to add prefixes to FASTA headers.  The
+idea is to support pangenomic applications, following the
+@url{https://github.com/pangenome/PanSN-spec, PanSN} hierarchical naming
+specification.")
+    (license license:expat)))
+
 (define-public gafpack
   (let ((commit "ad31875b6914d964c6fd72d1bf334f0843538fb6")     ; November 10, 2022
         (revision "1"))
-- 
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