From 6d3d3b3d166d823fab62187ffe454bb167ccd8a8 Mon Sep 17 00:00:00 2001
From: Efraim Flashner
Date: Tue, 21 Apr 2020 04:48:44 -0500
Subject: rearrange and deduplicate some packages

---
 gn/packages/bioinformatics.scm | 75 ------------------------------------------
 1 file changed, 75 deletions(-)

(limited to 'gn/packages/bioinformatics.scm')

diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 5a33929..02ac1e8 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -1266,78 +1266,3 @@ COVID-19 Virtual Biohackathon's Public Sequence Resource project.  You can use
 it to upload the genomes of SARS-CoV-2 samples to make them publicly and freely
 available to other researchers.")
       (license license:asl2.0))))
-
-(define-public python-arvados-python-client
-  (package
-    (name "python-arvados-python-client")
-    (version "2.0.2")
-    (source
-      (origin
-        (method url-fetch)
-        (uri (pypi-uri "arvados-python-client" version))
-        (sha256
-         (base32
-          "19l4w6m5426x5k2kick630dh2jx26j16ycs2nhbfgr4cd43d29y4"))))
-    (build-system python-build-system)
-    (arguments
-     `(#:tests? #f))    ; tests not included?
-    (propagated-inputs
-     `(("python-ciso8601" ,python-ciso8601)
-       ("python-future" ,python-future)
-       ;("python-google-api-python-client" ,python-google-api-python-client)
-       ("python-google-api-client" ,python-google-api-client)
-       ("python-httplib2" ,python-httplib2)
-       ("python-pycurl" ,python-pycurl)
-       ("python-ruamel.yaml" ,python-ruamel.yaml-0.15)
-       ("python-setuptools" ,python-setuptools)
-       ("python-ws4py" ,python-ws4py)))
-    (native-inputs
-     `(("python-mock" ,python-mock)
-       ("python-oauth2client" ,python-oauth2client)
-       ("python-pbr" ,python-pbr-1.6.0)
-       ("python-pyyaml" ,python-pyyaml)
-       ("python-uritemplate" ,python-uritemplate)))
-    (home-page "https://arvados.org")
-    (synopsis "Arvados client library")
-    (description "This package provides the arvados module, an API client for
-Arvados.  It also includes higher-level functions to help you write Crunch
-scripts, and command-line tools to store and retrieve data in the Keep storage
-server.")
-    (license license:asl2.0)))
-
-(define-public python-schema-salad
-  (package
-    (name "python-schema-salad")
-    (version "5.0.20200416112825")
-    (source
-      (origin
-        (method url-fetch)
-        (uri (pypi-uri "schema-salad" version))
-        (sha256
-         (base32
-          "1pm6q266qrw4r0w0vnzhsvqgk5j8b3q61hxg99awhgpjsmcvkmsz"))))
-    (build-system python-build-system)
-    (propagated-inputs
-     `(("python-cachecontrol" ,python-cachecontrol-0.11)
-       ("python-lockfile" ,python-lockfile)
-       ("python-mistune" ,python-mistune)
-       ("python-rdflib" ,python-rdflib)
-       ("python-rdflib-jsonld" ,python-rdflib-jsonld)
-       ("python-requests" ,python-requests)
-       ("python-ruamel.yaml" ,python-ruamel.yaml)
-       ("python-setuptools" ,python-setuptools)
-       ("python-typing-extensions" ,python-typing-extensions)))
-    (native-inputs
-     `(("python-pytest" ,python-pytest)
-       ("python-pytest-runner" ,python-pytest-runner)))
-    (home-page "https://github.com/common-workflow-language/schema_salad")
-    (synopsis "Schema Annotations for Linked Avro Data (SALAD)")
-    (description
-     "Salad is a schema language for describing JSON or YAML structured linked
-data documents.  Salad schema describes rules for preprocessing, structural
-validation, and hyperlink checking for documents described by a Salad schema.
-Salad supports rich data modeling with inheritance, template specialization,
-object identifiers, object references, documentation generation, code
-generation, and transformation to RDF.  Salad provides a bridge between document
-and record oriented data modeling and the Semantic Web.")
-    (license license:asl2.0)))
-- 
cgit v1.2.3