From 29633fd3a8bafce405bba487802cd3720e642d11 Mon Sep 17 00:00:00 2001
From: Efraim Flashner
Date: Tue, 26 Sep 2023 17:11:58 +0300
Subject: pggb: Add missing inputs

---
 gn/packages/bioinformatics.scm | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

(limited to 'gn/packages/bioinformatics.scm')

diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 535018b..9de6ad8 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -2717,7 +2717,8 @@ multiple sequence alignment.")
                                  '#$(map (lambda (label)
                                            (or (this-package-input (string-append label "-hwcaps"))
                                                (this-package-input label)))
-                                         (list "bcftools"
+                                         (list "bc"
+                                               "bcftools"
                                                "bedtools"
                                                "gfaffix"
                                                "htslib"
@@ -2735,6 +2736,7 @@ multiple sequence alignment.")
                                                "samtools"
                                                "seqwish"
                                                "smoothxg"
+                                               "time"
                                                "vcfbub"
                                                "vcflib"
                                                "vg"
@@ -2752,7 +2754,8 @@ multiple sequence alignment.")
                      (("/usr/local/bin/nucmer2vcf.R")
                       (string-append out "/bin/nucmer2vcf.R")))))))))
       (inputs
-       (list bcftools
+       (list bc
+             bcftools
              bedtools
              gfaffix
              guile-3.0      ; for wrap-script
@@ -2772,6 +2775,7 @@ multiple sequence alignment.")
              samtools
              seqwish
              smoothxg
+             time
              vcfbub
              vcflib
              vg
-- 
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