From c97646a5687f8ba834e3081bdee25a7457e90071 Mon Sep 17 00:00:00 2001
From: pjotrp
Date: Mon, 16 Dec 2019 05:12:23 -0600
Subject: Rename

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 README.md | 97 ---------------------------------------------------------------
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-# guix-bioinformatics
-
-Bioinformatics packages for GNU Guix that are used in
-http://genenetwork.org/.  See
-[Guix Notes](https://github.com/pjotrp/guix-notes/blob/master/HACKING.org)
-for installing and hacking GNU Guix.
-
-To easily use the packages from this repo, simply add it to your
-`channels` list in ~/.config/guix/channels.scm as described
-[here](https://guix.gnu.org/manual/en/html_node/Channels.html)
-
-    (cons*
-      (channel
-        (name 'gn-bioinformatics)
-        (url "https://git.genenetwork.org/pjotrp/guix-bioinformatics.git")
-        (branch "master"))
-      %default-channels)
-
-and run `guix pull` like normal to update your software. This is the
-recommended way to use the software from this repository and the code
-snippets in this README assume you have done so.
-
-If you want to make changes to the packages in this repo then simply set
-the GUIX_PACKAGE_PATH to point to the root of this directory
-before running Guix. E.g.
-
-    git clone https://git.genenetwork.org/pjotrp/guix-bioinformatics.git
-    export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/
-    guix package -A cwl
-
-or using a checked out Guix repo with
-
-    env GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ ./pre-inst-env guix package -A cwl
-
-Some (or most) of these package definitions should make it upstream
-into the GNU Guix repository when tested and stable.
-
-## Slurm and munge
-
-Install slurm with
-
-    guix pull
-    guix package -i slurm-llnl
-
-    ~/.guix-profile/sbin/slurmd -C -D
-      ClusterName=(null) NodeName=selinunte CPUs=4 Boards=1 SocketsPerBoard=1 CoresPerSocket=2 ThreadsPerCore=2 RealMemory=7890 TmpDisk=29909
-
-## Module system
-
-Install the module environment with
-
-    guix pull
-    guix package -i environment-modules
-
-    modulecmd --version
-      VERSION=3.2.10
-      DATE=2012-12-21
-
-## python2-numarray 1.5.2
-
-Install python2-numarray package with
-
-    guix pull
-    guix package -i python2-numarray
-
-## Common Workflow Language (CWL)
-
-Install the common workflow language tool cwltool with
-
-    guix pull
-    guix package -i python2-cwltool
-
-    cwtool --version
-      1.0.20150916041152
-
-# Development tips
-
-## Override individual packages
-
-The cheerful way of overriding a version of a package:
-
-    (use-modules (guix) (gnu packages emacs))
-
-    (package
-      (inherit emacs)
-      (name "emacs-snapshot")
-      (source "/path/to/some-file-or-directory.tar.gz"))
-
-and then run:
-
-    guix package --install-from-file=that-file.scm
-
-
-## LICENSE
-
-These package descriptions (so-called Guix expressions) are
-distributed by the same license as GNU Guix, i.e. GPL3+
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