From 5dafd6b1766872d4d412e7588cc1303931c889f0 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Fri, 18 Sep 2015 15:45:07 +0900
Subject: README

---
 README.md | 12 ++++++++----
 1 file changed, 8 insertions(+), 4 deletions(-)

(limited to 'README.md')

diff --git a/README.md b/README.md
index 12f899f..787cfa0 100644
--- a/README.md
+++ b/README.md
@@ -6,9 +6,11 @@ See [Guix Notes](https://github.com/pjotrp/guix-notes/blob/master/HACKING.org) f
 Set the GUIX_PACKAGE_PATH to point to the root of this directory
 before running Guix. E.g.
 
-    env GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ guix package -A cwl
+    git clone https://github.com/genenetwork/guix-bioinformatics.git
+    export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/
+    guix package -A cwl
 
-or from the checked out Guix repo
+or using a checked out Guix repo
 
     env GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/ ./pre-inst-env guix package -A cwl
 
@@ -19,14 +21,16 @@ Guix repository when tested and stable.
 
 Install the common workflow language tool cwltool with
 
-    export GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/
+    git clone https://github.com/genenetwork/guix-bioinformatics.git
+    export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/
     guix package -i python2-cwltool
     cwtool --version
       1.0.20150916041152
 
 ## Install R/qtl
 
-    export GUIX_PACKAGE_PATH=$genenetwork/guix-bioinformatics/
+    git clone https://github.com/genenetwork/guix-bioinformatics.git
+    export GUIX_PACKAGE_PATH=$PWD/guix-bioinformatics/
     guix package -i r-qtl r
     R
       library(qtl)
-- 
cgit v1.2.3