From ed8342aae99e88b36459a85df7cc339a18b75591 Mon Sep 17 00:00:00 2001
From: Muriithi Frederick Muriuki
Date: Thu, 21 Jun 2018 18:50:23 +0300
Subject: Add python-reaper
* gn/packages/genenetwork.scm (python-reaper): New package.
---
gn/packages/genenetwork.scm | 31 ++++++++++++++++++++++++++++++-
1 file changed, 30 insertions(+), 1 deletion(-)
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 56b5281..bba25c0 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -399,6 +399,34 @@ location of a putative QTL.")
(license license:agpl3+))))
+
+(define-public python-reaper
+ (let (;;(commit "b8db1fb0857bc76a5881aba980a912fc774389ff")
+ (commit "a873abe18e3a7469c9c700aba6454fee69b32686"))
+ (package
+ (name "python-reaper")
+ (version (string-append "0.0.1-"
+ (string-take commit 7)))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/fredmanglis/reaper.git")
+ (commit commit)))
+ (sha256
+ (base32
+ "140gzadz52dwfl2m1c8vwh6ckyl8q681w7rwfl1z1h8yw42nm2n7"
+ ;;"1mg4b6avf0fq8kjpxv3ag33ivsyrj0amhvna0kvyjj49aj1gmhr7"
+ ;; "0klgjra2qisfzs8mk0s8vzdr190l4n56xcm66dk0asqs7zswi8di" ;; default
+ ))))
+ (build-system python-build-system)
+ (arguments
+ `(#:tests? #f))
+ (home-page "https://github.com/fredmanglis/reaper")
+ (synopsis "Parser for .geno files")
+ (description "Parser for .geno files. It replaces the Python2 library
+written in C")
+ (license license:agpl3+))))
+
(define-public genenetwork3
(let (;; (commit "1538ffd33af19e6ac922b4ee85fe701408968dfd")
(commit "5bff4f49dffb4ac982d36cd0d39e0a9ec6bc66e9"))
@@ -446,7 +474,6 @@ location of a putative QTL.")
("javascript-qtip" ,javascript-cytoscape-qtip)
;; With Python3 support
- ("python-wrapper" ,python-wrapper)
("gunicorn" ,gunicorn)
("python-rpy2" ,python-rpy2)
("python-flask" ,python-flask)
@@ -454,11 +481,13 @@ location of a putative QTL.")
("python-numpy" ,python-numpy)
("python-redis" ,python-redis)
("python-scipy" ,python-scipy)
+ ("python-reaper" ,python-reaper)
("python-pyyaml" ,python-pyyaml)
("python-jinja2" ,python-jinja2)
("python-pandas" ,python-pandas)
("python-htmlgen" ,python-htmlgen)
("python-passlib" ,python-passlib)
+ ("python-wrapper" ,python-wrapper)
("python-requests" ,python-requests)
("python-cssselect" ,python-cssselect)
("python-sqlalchemy" ,python-sqlalchemy)
--
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