From 91f6f758f40f3eeba656aa5fb7e9c1f67d38978f Mon Sep 17 00:00:00 2001
From: Roel Janssen
Date: Tue, 23 Feb 2016 23:31:57 +0100
Subject: Latest Sambamba. Link failure.
---
gn/packages/bioinformatics.scm | 12 ++++++++++--
1 file changed, 10 insertions(+), 2 deletions(-)
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 3363ea2..90da815 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -310,7 +310,9 @@ minimize the amount of work necessary. Unlike make, rdmd tracks dependencies
and freshness without requiring additional information from the user.")
(license license:boost1.0))))
+
(define-public sambamba
+ ;;(let ((commit "8fe1bda92423c7c97a52ef81c6871fd6569fd1da"))
(let ((commit "2ca5a2dbac5ab90c3b4c588519edc3edcb71df84"))
(package
(name "sambamba")
@@ -319,11 +321,14 @@ and freshness without requiring additional information from the user.")
(method git-fetch)
(uri (git-reference
(url "https://github.com/pjotrp/sambamba.git")
+ ;;(url "https://github.com/roelj/sambamba.git")
(commit commit)))
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
- "1f14wn9aaxwjkmla6pzq3s28741carbr2v0fd2v2mm1dcpwnrqz5"))))
+ "1f14wn9aaxwjkmla6pzq3s28741carbr2v0fd2v2mm1dcpwnrqz5"
+ ;;"14gx0hhn039xhgkf5hbvffn9d0ld4zn9ka2zvvdi16k441sc8wjh"
+ ))))
(build-system gnu-build-system)
;; (inputs
;; `(("ldc" ,ldc)
@@ -395,7 +400,10 @@ and freshness without requiring additional information from the user.")
(replace
'build
(lambda* (#:key inputs make-flags #:allow-other-keys)
- (zero? (system* "make" "-f" "Makefile.guix" "CC=gcc" "D_COMPILER=ldc2")))))))
+ (zero? (system* "make" "-f" "Makefile.guix" "CC=gcc"
+ "D_COMPILER=ldc2"
+ (string-append "LDC_LIB_PATH="
+ (assoc-ref inputs "ldc") "/lib"))))))))
(home-page "https://github.com/lomereiter/sambamba")
(synopsis "A tool for working with SAM and BAM files written in D.")
(description
--
cgit v1.2.3