From 699b05703c743baf51f720db22eb0a2438cb8cad Mon Sep 17 00:00:00 2001
From: pjotrp
Date: Sun, 26 Feb 2017 18:48:20 +0000
Subject: Updating packages

- Removed slurm as it is in mainline now
---
 gn/packages/slurm.scm      | 100 ---------------------------------------------
 gn/packages/statistics.scm |   2 +-
 gn/packages/tcl.scm        |   2 +-
 3 files changed, 2 insertions(+), 102 deletions(-)
 delete mode 100644 gn/packages/slurm.scm

diff --git a/gn/packages/slurm.scm b/gn/packages/slurm.scm
deleted file mode 100644
index 9e3d063..0000000
--- a/gn/packages/slurm.scm
+++ /dev/null
@@ -1,100 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2015 Roel Janssen <roel@gnu.org>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
-
-(define-module (gn packages slurm)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (gnu packages)
-  #:use-module (guix packages)
-  #:use-module (guix download)
-  #:use-module (guix build-system gnu)
-  #:use-module (gnu packages tcl)
-  #:use-module (gnu packages linux)
-  #:use-module (gnu packages textutils)
-  #:use-module (gnu packages base)
-  #:use-module (gnu packages gnupg)
-  #:use-module (gnu packages libedit)
-  #:use-module (gnu packages llvm)
-  #:use-module (gnu packages perl)
-  #:use-module (gnu packages python)
-  #:use-module (gnu packages tls)
-  #:use-module (gnu packages zip)
-  #:use-module (guix git-download))
-
-(define-public slurm-llnl
-  (package
-   (name "slurm-llnl")
-   (version "15-08-6-1")
-   (source (origin
-             (method url-fetch)
-             (uri (string-append "https://github.com/SchedMD/slurm/archive/slurm-"
-                                 version ".tar.gz"))
-             (file-name (string-append name "-" version ".tar.gz"))
-             (sha256
-              (base32
-               "1h8al21blmrhma9r7qxkba2g5i74m3hrjc9a640j7px54szvg18v"))))
-    (inputs `(("openssl" ,openssl)
-              ("munge" ,munge)
-              ("perl" ,perl)
-              ("expect" ,expect)
-              ("python" ,python)
-              ("linux-pam" , linux-pam)))
-    (build-system gnu-build-system)
-    (arguments
-     `(#:configure-flags '("--enable-pam")
-       #:phases
-       (modify-phases %standard-phases
-         (add-before
-          'configure 'rewrite-usr-bin
-          (lambda* (#:key inputs #:allow-other-keys)
-                   (substitute* "./doc/html/shtml2html.py"
-                                (("#!/usr/bin/env python")
-                                 (string-append "#!" (which "python3"))))
-                   (substitute* "src/common/env.c"
-                                (("/usr/bin/env") (which "env"))))))))
-    (home-page "http://www.schedmd.com/")
-    (synopsis "Tool for cluster computing")
-    (description
-     "Fault-tolerant, and highly scalable cluster management and job
-scheduling system for large and small clusters.")
-    (license license:gpl2+)))
-
-(define-public munge
-  (package
-    (name "munge")
-    (version "0.5.11")
-    (source (origin
-             (method url-fetch)
-             (uri (string-append "https://github.com/dun/munge/archive/munge-"
-                                 version ".tar.gz"))
-             (file-name (string-append name "-" version ".tar.gz"))
-             (sha256
-              (base32
-               "0njplyalwwqh7xr7xc7klc6x06mq0ak8w2pxh85w8n4hxkmqqnf5"))))
-    (inputs `(("openssl" ,openssl)
-              ("libgcrypt" ,libgcrypt)))
-    (build-system gnu-build-system)
-    (home-page "https://dun.github.io/munge/")
-    (synopsis "Scalable authentication service for creating and validating
-credentials on a cluster")
-    (description "Munge allows a process to authenticate the UID and
-GID of another local or remote process within a group of hosts having
-common users and groups.  These hosts form a security realm that is
-defined by a shared cryptographic key.  Clients within this security
-realm can create and validate credentials without the use of root
-privileges, reserved ports, or platform-specific methods.")
-    (license license:gpl2+)))
diff --git a/gn/packages/statistics.scm b/gn/packages/statistics.scm
index b83ccf2..4af5cc5 100644
--- a/gn/packages/statistics.scm
+++ b/gn/packages/statistics.scm
@@ -364,7 +364,7 @@
 for use in genome-wide association studies (GWAS).")
     (license license:agpl3+))))
 
-(define-public r-ctl
+(define-public r-ctl ; guix: ready
  (package
   (name "r-ctl")
   (version "1.0.0-0")
diff --git a/gn/packages/tcl.scm b/gn/packages/tcl.scm
index 9b1cb5a..d71c1c6 100644
--- a/gn/packages/tcl.scm
+++ b/gn/packages/tcl.scm
@@ -13,7 +13,7 @@
   #:use-module (gnu packages xorg)
   #:use-module (guix licenses))
 
-(define-public environment-modules
+(define-public environment-modules ; guix: fix DL and tests
   (package
     (name "environment-modules")
     (version "3.2.10")
-- 
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