guix-bioinformatics/guix - guix

Commit Graph

Author	SHA1	Message	Date
Ludovic Courtès	773e956d5d	system: Augment the default set of groups. * gnu/system/shadow.scm (%base-groups): New variable. * gnu/system.scm (<operating-system>)[groups]: Use it as the default.	8 years ago
Ludovic Courtès	72507e23b5	system: Remove useless 'members' field of 'user-group'. * gnu/system/shadow.scm (<user-group>)[members]: Remove field. * gnu/system/install.scm (installation-os)[users]: Remove 'members' fields. Use 'supplementary-groups' for 'guest'. * build-aux/hydra/demo-os.scm (users): Likewise. * gnu/services/base.scm (guix-service): Remove 'members' field.	8 years ago
Ludovic Courtès	528b6a3dce	gnu: kmod: Honor $LINUX_MODULE_DIRECTORY. * gnu/packages/patches/kmod-module-directory.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/linux.scm (kmod)[origin]: Use it.	8 years ago
Andreas Enge	d7d42d6b24	gnu: Add udev. * gnu/packages/linux.scm (udev): New variable. * gnu/packages/patches/udev-gir-libtool.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. Co-authored-by: Ludovic Courtès <ludo@gnu.org>	8 years ago
Andreas Enge	e062d54240	gnu: Add kmod. * gnu/packages/linux.scm (kmod): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>	8 years ago
Ludovic Courtès	9b9148d8bb	linux-initrd: Allow unionfs to have a large number of open files. Fixes <http://bugs.gnu.org/17827>. * guix/build/linux-initrd.scm (mount-root-file-system) [volatile-root?]: Pass unionfs '-o max_file=65536'.	8 years ago
Ludovic Courtès	738146bfd4	nls: Update 'sr' translation.	8 years ago
Ludovic Courtès	b6a4dba116	gnu: man-pages: Upgrade to 3.69. * gnu/packages/man.scm (man-pages): Upgrade to 3.69.	8 years ago
Ludovic Courtès	d3e3b77dcc	gnu: gnupg: Upgrade to 2.0.23. * gnu/packages/gnupg.scm (gnupg): Upgrade to 2.0.23.	8 years ago
Ludovic Courtès	ea9711018c	gnu: global: Upgrade to 6.3. * gnu/packages/global.scm (global): Upgrade to 6.3.	8 years ago
Ludovic Courtès	f513527a8e	Merge branch 'core-updates'	8 years ago
Ludovic Courtès	00fe93338d	substitute-binary: Warn about uninitialized ACL. * guix/scripts/substitute-binary.scm (guix-substitute-binary): Call 'check-acl-initialized'. (check-acl-initialized): Don't rely on 'equal?' to compare keys. Instead, convert keys to strings.	8 years ago
Ludovic Courtès	080571eeac	doc: Mention KVM support for 'guix system'. * doc/guix.texi (Invoking guix system): Add note about KVM support.	8 years ago
Ludovic Courtès	9b762b8d7c	system: Prefer packages from %FINAL-INPUTS. * gnu/packages/base.scm (canonical-package): New procedure. * gnu/system.scm (%base-packages): Pass BASH, COREUTILS, FINDUTILS, GREP, and SED through 'canonical-package'.	8 years ago
Ludovic Courtès	eef4096c14	guix system: 'init' makes sure the target store directory exists. * guix/scripts/system.scm (install): Before calling 'copy-closure', make sure directory (%store-prefix) under TARGET exists.	8 years ago
Ludovic Courtès	dc34393569	gnu: isc-dhcp: In native builds, refer to the final Coreutils and sed. * gnu/packages/admin.scm (isc-dhcp)[inputs]: Add Coreutils and sed only when (%current-target-system) is true.	8 years ago
Ludovic Courtès	ae5c6fca26	gnu: privoxy: Use etc/privoxy as the sysconfdir. Reported by "d00000" on #guix. * gnu/packages/tor.scm (privoxy)[arguments]: Add #:configure-flags.	8 years ago
Mark H Weaver	2c14c6d7cb	gnu: gawk: Apply work around to build system for MIPS. * gnu/packages/gawk.scm (gawk): Work around a build problem on MIPS.	8 years ago
Ludovic Courtès	ed4a8816d6	gnu: linux-libre: Upgrade to 3.15. * gnu/packages/linux.scm (linux-libre): Upgrade to 3.15.	8 years ago
Ludovic Courtès	c8f60748bd	gnu: kbd: Patch buggy makefile. * gnu/packages/linux.scm (kbd)[source]: Add 'modules' and 'snippet' fields.	8 years ago
Ludovic Courtès	81f61c17c5	build: Add 'assert-final-inputs-self-contained' rule. * build-aux/check-final-inputs-self-contained.scm: New file. * Makefile.am (EXTRA_DIST): Add it. (assert-final-inputs-self-contained): New target. (distcheck-hook): Depend on it.	8 years ago
Ludovic Courtès	2eea253f4d	substitute-binary: Avoid the term "narinfo" in user messages. * guix/scripts/substitute-binary.scm (assert-valid-narinfo): Change message to avoid the term "narinfo".	8 years ago
Ludovic Courtès	26fd908fcf	Thank Benno.	8 years ago
Ludovic Courtès	648453e8d6	nls: Use xgettext and msgmerge with --no-wrap. Suggested by Benno Schulenberg <coordinator@translationproject.org>. * po/guix/Makevars (XGETTEXT_OPTIONS): Add --no-wrap. (MSGMERGE_OPTIONS): New variable. * po/packages/Makevars (XGETTEXT_OPTIONS): Add --no-wrap. (MSGMERGE_OPTIONS): New variable.	8 years ago
Ludovic Courtès	7f52946adf	nls: Remove obsolete messages from PO files. Suggested by Benno Schulenberg <coordinator@translationproject.org>. * po/guix/eo.po, po/guix/pt_BR.po, po/guix/sr.po, po/guix/vi.po, po/packages/eo.po, po/packages/pt_BR.po, po/packages/sr.po, po/packages/vi.po: Remove obsolete messages.	8 years ago
Ludovic Courtès	278b64283a	tests: Use the C locale for 'guix package -s'. * tests/guix-package.sh: Set LC_MESSAGES=C before the 'guix package -s' test.	8 years ago
Ludovic Courtès	c4e52354c6	gnu: guile-ncurses: Work around missing test files. * gnu/packages/patches/guile-ncurses-tests.patch: New file. * gnu/packages/guile.scm (guile-ncurses)[source]: Use it. * gnu-system.am (dist_patch_DATA): Add it.	8 years ago
Ludovic Courtès	1319cfe946	gnu: icu4c: Upgrade to 53.1. * gnu/packages/icu4c.scm (icu4c): Upgrade to 53.1.	8 years ago
Ludovic Courtès	eb705bb3f7	gnu: icu4c: Fix failing test. * gnu/packages/patches/icu4c-test-date-format.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/icu4c.scm (icu4c)[source]: Use it.	8 years ago
Ludovic Courtès	b344c505f4	gnu: qemu: Remove dependency on Samba. * gnu/packages/qemu.scm (qemu-headless)[inputs]: Remove SAMBA. [arguments]: Remove --smbd configure flag.	8 years ago
Ludovic Courtès	7190ae7743	Reverting "gnu: ncurses: Build libtinfo." This reverts commit `953c9fcf8c`. It turns out that most packages (guile-ncurses, cursynth, aumix, util-linux, etc.) expect libncurses to provide everything. So they had to be patched to add -ltinfow to their LDFLAGS, which is counterproductive. Other recent distros take that approach---e.g., <https://bugs.launchpad.net/ubuntu/+source/ncurses/+bug/259139>.	8 years ago
Ludovic Courtès	c3428a08be	gnu: apr: Build sequentially. * gnu/packages/apr.scm (apr)[arguments]: New field.	8 years ago
Ludovic Courtès	09ba396c02	gnu: Remove dependency from gzip to the bootstrap binaries. * gnu/packages/base.scm (grep-final): New variable. (%boot5-inputs): Add it. (%final-inputs): Use it.	8 years ago
John Darrington	feadf100a2	gnu: Add cook. * gnu/packages/cook.scm: New file. * gnu-system.am: New file cook.scm.	8 years ago
Ludovic Courtès	5c860cec83	gnu: gcc: Really avoid 'install-strip' when cross-compiling. This is a followup to `6b9229c`. * gnu/packages/gcc.scm (gcc-4.7): Turn 'install-target' into a thunk, so (%current-target-system) is current.	8 years ago
Ludovic Courtès	7470df5ddf	Merge branch 'master' into core-updates	8 years ago
Ludovic Courtès	07254feb24	ui: Avoid circularity with (guix gexp). Fixes a regression introduced in `56b8210` ("guix build: Allow gexps to be passed to '-e'.") * guix/ui.scm (%guix-user-module): Wrap in 'delay'. (read/eval): Adjust accordingly.	8 years ago
Ludovic Courtès	240a2775de	i18n: Move package descriptions from 'guix' to 'guix-packages'. * po/guix: Merge with po/packages as per <https://lists.gnu.org/archive/html/guix-devel/2014-06/msg00058.html>. * po/packages/LINGUAS: Add eo, pt_BR, sr, and vi.	8 years ago
Ludovic Courtès	243cea2461	guix: Look for "guix-packages" messages in $localedir. * scripts/guix.in (run-guix-main): Add 'bindtextdomain' call.	8 years ago
Ludovic Courtès	56b8210697	guix build: Allow gexps to be passed to '-e'. * guix/ui.scm (%guix-user-module): New variable. (read/eval): Pass it as the second argument to 'eval'. * guix/scripts/build.scm (options/resolve-packages): Add case for 'gexp?'. * tests/guix-build.sh: Add tests. * doc/guix.texi (Invoking guix build): Document '-e gexp'. guxi build: Allow gexps to be passed to '-e'. * guix/ui.scm (%guix-user-module): New variable. (read/eval): Pass it as the second argument to 'eval'. * guix/scripts/build.scm (options/resolve-packages): Add case for 'gexp?'. * tests/guix-build.sh: Add tests. * doc/guix.texi (Invoking guix build): Document '-e gexp'.	8 years ago
Ludovic Courtès	d2e2f14226	gnu: gcc-4.7: Upgrade to 4.7.4. * gnu/packages/gcc.scm (gcc-4.7): Upgrade to 4.7.4.	8 years ago
Ludovic Courtès	6b9229ca51	gnu: gcc: Don't use the 'install-strip' target when cross-compiling. * gnu/packages/gcc.scm (gcc-4.7): Add 'install-target' variable. Use it in the 'install' phase.	8 years ago
Ludovic Courtès	fd0b276624	gnu: gcc: Fix cross-compilation of gcc (Canadian cross). * gnu/packages/gcc.scm (gcc-4.7)[arguments] <#:make-flags>: When (%current-target-system) is true, pass the empty list or '("CFLAGS=-g0 -O2").	8 years ago
Ludovic Courtès	6e3ecad6ca	gnu: make-bootstrap: Make sure %gcc-stripped binaries are usable. * gnu/packages/make-bootstrap.scm (%gcc-stripped): When (%current-target-system) is false, run gcc, g++, and cpp with --version.	8 years ago
Ludovic Courtès	c4873bc4f5	gnu: make-bootstrap: Build %gcc-static with --disable-lto. * gnu/packages/make-bootstrap.scm (%gcc-static): Pass --disable-lto.	8 years ago
Eric Bavier	a83c6a6471	gnu: Add pingus. * gnu/packages/games.scm (pingus): New variable. * gnu/packages/patches/pingus-sdl-libs-config.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it.	8 years ago
John Darrington	95faa10714	gnu: Add busybox. * gnu/packages/busybox.scm: New file. * gnu-system.am: Add gnu/packages/busybox.scm.	8 years ago
Ludovic Courtès	97b465feb1	gnu: make-bootstrap: Build libstdc++ in '%gcc-static'. * gnu/packages/make-bootstrap.scm (%gcc-static): Re-enable C++.	8 years ago
Ludovic Courtès	ee76417972	Separate package description translations from string translations. * po/packages/LINGUAS, po/packages/Makevars, po/packages/POTFILES.in: New files. * po/guix/Makevars (DOMAIN): Change to "guix". (XGETTEXT_OPTIONS): Remove "--keyword=synopsis --keyword=description". * po/guix/POTFILES.in: Remove gnu/packages/.scm. configure.ac: Change to gettext 0.18.3. Produce po/packages/Makefile.in. * Makefile.am (SUBDIRS): Add po/packages. * guix/ui.scm (%package-text-domain): New variable. (P_): New procedure. (package->recutils): Use 'P_' instead of '_'. * guix/scripts/package.scm (find-packages-by-description): Use 'P_' instead of 'gettext'.	8 years ago
Ludovic Courtès	ef1a9bb7d6	Move gettext files to 'po/guix'. * po: Rename to... * po/guix: ... this. * po/guix/Makevars (subdir, top_builddir): Adjust accordingly. * configure.ac: Change 'po/Makefile.in' to 'po/guix/Makefile.in'. * Makefile.am (SUBDIRS): Change 'po' to 'po/guix'.	8 years ago

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3218 Commits (773e956d5d5743c246f8e7199d9b43e4d32b403c) All Branches Search

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