guix-bioinformatics/guix - guix

Commit Graph

Author	SHA1	Message	Date
Efraim Flashner	538fe01934	gnu: python-vcversioner: Update to 2.16.0.0. * gnu/packages/python.scm (python-vcversioner): Update to 2.16.0.0. [inputs]: Remove python-setuptools. [properties]: New field. (python2-vcversioner): Use 'strip-python2-variant'. [native-inputs]: Add python2-setuptools.	6 years ago
Tobias Geerinckx-Rice	1f781865fb	gnu: fish: Update to 2.4.0. * gnu/packages/shells.scm (fish): Update to 2.4.0.	6 years ago
Tomáš Čech	e25c904f2c	services: Require wpa-supplicant-service for connman-service. * gnu/services/networking.scm (connman-shepherd-service): Add wpa-supplicant among list of requirements.	6 years ago
Tomáš Čech	2cccbc2af2	services: Add wpa-supplicant-service. * gnu/services/networking.scm (wpa-supplicant-service): New procedure. (wpa-supplicant-service-type): New variable. * doc/guix.texi (Networking Services): Document it.	6 years ago
Tomáš Čech	028bf3c0b2	gnu: connman: Use localstatedir outside of store. * gnu/packages/connman.scm (connman): Use localstatedir outside of store.	6 years ago
Efraim Flashner	8bcd6b91ff	gnu: python-jsonschema: Use 'nosetests'. * gnu/packages/python.scm (python-jsonschema)[arguments]: Replace 'check phase with python nosetests. [native-inputs]: Add python-nose. [home-page]: Use https. (python2-jsonschema)[native-inputs]: Add python2-mock.	6 years ago
Efraim Flashner	571ffdebc3	gnu: accountsservice: Update to 0.6.43. * gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.43.	6 years ago
Ludovic Courtès	a4cb821791	gnu: guix-devel: Update development snapshot. * gnu/packages/package-management.scm (guix-devel): Update to commit `7ca37da855`.	6 years ago
Ludovic Courtès	198eac2bca	gnu: guix: Really skip all the container tests. * gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Update pattern in 'disable-container-tests' to match 'test-equal'.	6 years ago
Tobias Geerinckx-Rice	88eaed6174	gnu: libpsl: Update to 0.15.0. * gnu/packages/web.scm (libpsl): Update to 0.15.0.	6 years ago
Efraim Flashner	7ca37da855	gnu: libinput: Enable GUI event tool. * gnu/packages/freedesktop.scm (libinput)[inputs]: Add glib. [native-inputs]: Add cairo, gtk+-3. (libinput-minimal)[native-inputs]: Only pkg-config.	6 years ago
Efraim Flashner	73bb984ec4	gnu: freedesktop.scm: Reorder modules alphabetically. * gnu/packages/freedesktop.scm: Reorder modules alphabetically.	6 years ago
Efraim Flashner	8c5cdf5f20	gnu: libinput: Update to 1.5.1. * gnu/packages/freedesktop.scm (libinput): Update to 1.5.1.	6 years ago
Efraim Flashner	b231b057cd	gnu: wayland-protocols: Update to 1.7. * gnu/packages/freedesktop.scm (wayland-protocols): Update to 1.7.	6 years ago
Andy Patterson	e66f0dd232	gnu: mpv: Use lua@5.2. * gnu/packages/video.scm (mpv)[inputs]: Change 'lua' to 'lua-5.2'.	6 years ago
Alex Sassmannshausen	c91b368e96	import/cpan: Maybe coerce version to string. * guix/import/cpan.scm (cpan-module->sexp) <version>: Test if version in meta is string or number. If it is number, coerce to string.	6 years ago
Leo Famulari	d9721bcf27	gnu: readline-6.2: Fix CVE-2014-2524. * gnu/packages/patches/readline-6.2-CVE-2014-2524.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/readline.scm (readline-6.2): Use it.	6 years ago
Leo Famulari	27d7c4e93a	gnu: signify: Update to 20. * gnu/packages/crypto.scm (signify): Update to 20.	6 years ago
Ludovic Courtès	142530178d	gnu: mailutils: Update to 3.0. * gnu/packages/mail.scm (mailutils): Update to 3.0. [arguments]: Adjust 'pre-build' phase. * gnu/packages/patches/m4-gets-undeclared.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.	6 years ago
Efraim Flashner	d81850d438	gnu: guile-ncurses: Update to 2.1. * gnu/packages/guile.scm (guile-ncurses): Update to 2.1. [home-page]: Use https.	6 years ago
Tobias Geerinckx-Rice	927d850512	gnu: btrfs-progs: Update to 4.8.3. * gnu/packages/linux.scm (btrfs-progs): Update to 4.8.3.	6 years ago
Tobias Geerinckx-Rice	917239ff99	gnu: tidy: Use ‘modify-phases’. * gnu/packages/web.scm (tidy)[arguments]: Use the ‘modify-phases’ syntax.	6 years ago
Tobias Geerinckx-Rice	3b0ac79500	gnu: protobuf: Replace dead Google Code home-page. * gnu/packages/protobuf.scm (protobuf)[home-page]: Update it.	6 years ago
Tobias Geerinckx-Rice	3b0f2ba46b	gnu: exfat-utils: Update to 1.2.4. * gnu/packages/mtools.scm (exfat-utils): Update to 1.2.4. [source, home-page]: Move away from dead Google Code project. [arguments, native-inputs]: Remove.	6 years ago
Andy Patterson	a24b56fa8d	tests: Don't check file-systems in container tests. Hello, The containers test was hanging for me, and this patch fixed the problem. -- Andy From `945ad44acf` Mon Sep 17 00:00:00 2001 From: Andy Patterson <ajpatter@uwaterloo.ca> Date: Sat, 12 Nov 2016 22:10:01 -0500 Subject: [PATCH] tests: Don't check file-systems in container tests. * tests/containers.scm ("call-with-container, mnt namespace"): Don't check file-system in 'call-with-container' call. * tests/containers.scm ("call-with-container, mnt namespace, wrong bindmount"): Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org>	6 years ago
Andy Patterson	c25a51d5c6	gnu: clisp: Use readline@6.2. * gnu/packages/lisp.scm (clisp)[inputs]: Use readline-6.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>	6 years ago
Ludovic Courtès	2cab1dd58b	Merge branch 'core-updates'	6 years ago
Efraim Flashner	15abcabe4e	gnu: Add newsbeuter. * gnu/packages/syndication.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.	6 years ago
Efraim Flashner	c76dab7b36	gnu: Add stfl. * gnu/packages/ncurses.scm (stfl): New variable.	6 years ago
Alex Sassmannshausen	8883b30165	gnu: Add perl-modern-perl. * gnu/packages/perl.scm (perl-modern-perl): New variable.	6 years ago
Leo Famulari	5c66314bd9	gnu: libtiff: Fix CVE-2016-9273. * gnu/packages/patches/libtiff-CVE-2016-9273.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/image.scm (libtiff/fixed): Use it.	6 years ago
Danny Milosavljevic	0a7f17f0e0	gnu: Add python-flask-restplus. * gnu/packages/python.scm (python-flask-restplus): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>	6 years ago
Danny Milosavljevic	1e6112d89f	gnu: Add python-rednose. * gnu/packages/python.scm (python-rednose): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>	6 years ago
Danny Milosavljevic	e2fca4906e	gnu: Add python-termstyle. * gnu/packages/python.scm (python-termstyle): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>	6 years ago
Ludovic Courtès	998f9ac56d	gnu: guix: Update development snapshot. This is a followup to `166ba5b102`. * gnu/packages/package-management.scm (guix-devel): Update to commit `166ba5b102`.	6 years ago
Ludovic Courtès	166ba5b102	substitute: Disable HTTPS certificate verification. Fixes a regression introduced in `9e4e431e04` as a consequence of `bc3c41ce36`. Reported by Marius Bakke <mbakke@fastmail.com>. * guix/scripts/substitute.scm (fetch): Pass #:verify-certificate? #f to 'open-connection-for-uri' and 'http-fetch'. (download-cache-info): Likewise. (http-multiple-get): Add #:verify-certificate? and honor it. (fetch-narinfos): Pass #:verify-certificate? #f.	6 years ago
Ludovic Courtès	17cff9c662	http-client: Add #:verify-certificate? to 'http-fetch'. * guix/http-client.scm (http-fetch): Add #:verify-certificate? parameter and pass it to 'open-connection-for-uri'.	6 years ago
Ludovic Courtès	eda2ad5cd1	nls: Update 'fr' translation.	6 years ago
Clément Lassieur	4a38422157	gnu: prosody: fix SSL/TLS. * gnu/packages/lua.scm (lua5.1-sec-0.5): New variable. * gnu/packages/messaging.scm (prosody): [inputs]: Change lua5.1-sec to lua5.1-sec-0.5. Signed-off-by: Ludovic Courtès <ludo@gnu.org>	6 years ago
John Darrington	e32171eeeb	doc: Added some index entries. * doc/guix.texi: Added various @cindex tags to assist readers.	6 years ago
Ben Woodcroft	8be62d3f20	gnu: ruby-lumberjack: Update to 1.0.10. * gnu/packages/ruby.scm (ruby-lumberjack): Update to 1.0.10. [native-inputs]: Add 'ruby-timecop'.	6 years ago
Ben Woodcroft	e87dfdee86	gnu: ruby-arel: Update to 7.1.4. * gnu/packages/ruby.scm (ruby-arel): Update to 7.1.4.	6 years ago
Ben Woodcroft	16d8d8b289	gnu: ruby-rake-compiler: Update to 1.0.1. * gnu/packages/ruby.scm (ruby-rake-compiler): Update to 1.0.1.	6 years ago
Ben Woodcroft	81d0bd2f44	gnu: ruby-hoe: Update to 3.15.2. * gnu/packages/ruby.scm (ruby-hoe): Update to 3.15.2.	6 years ago
Ben Woodcroft	c59491183a	gnu: ruby-rspec-core: Update to 3.5.4. * gnu/packages/ruby.scm (ruby-rspec-core): Update to 3.5.4.	6 years ago
Ben Woodcroft	bb4bcb02c2	gnu: bundler: Update to 1.13.6. * gnu/packages/ruby.scm (bundler): Update to 1.13.6.	6 years ago
Ben Woodcroft	e2bb2e1780	gnu: ruby-yard: Update to 0.9.5-1.d816482a. * gnu/packages/ruby.scm (ruby-yard): Update to 0.9.5-1.d816482a. [source]: Update source URL. [arguments]: Remove unneeded substitutions. Change test target. * gnu/packages/patches/ruby-yard-fix-skip-of-markdown-tests.patch (New file) * gnu/local.mk (dist_patch_DATA): Add it.	6 years ago
Ricardo Wurmus	7c45670b32	gnu: r-org-mm-eg-db: Update to 3.4.0. * gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.4.0.	6 years ago
Ricardo Wurmus	0cfac6f270	gnu: r-org-dm-eg-db: Update to 3.4.0. * gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.4.0.	6 years ago
Ricardo Wurmus	f04a3eff98	gnu: r-org-ce-eg-db: Update to 3.4.0. * gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.4.0.	6 years ago

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16194 Commits (538fe01934c38ebe06e6b68d805e410694191f49) All Branches Search

16194 Commits (538fe01934c38ebe06e6b68d805e410694191f49)

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