guix-bioinformatics/guix - guix

Commit Graph

Author	SHA1	Message	Date
Alex Kost	12f2490aa3	emacs: Handle autoloading Emacs packages installed with Guix. * emacs/guix-emacs.el: New file. * emacs.am (ELFILES): Add it. * emacs/guix-backend.el (guix-after-repl-operation-hook): Add 'guix-emacs-load-autoloads-maybe'. * emacs/guix-init.el.in: Autoload emacs packages. (guix-package-enable-at-startup): New variable.	8 years ago
Alex Kost	3db349cb09	emacs: Move profiles code to "guix-profiles.el.in". * emacs/guix-base.el (guix-user-profile, guix-default-profile, guix-current-profile, guix-profile-prompt, guix-set-current-profile): Move to... * emacs/guix-init.el.in (guix-default-profile): Move to... * emacs/guix-profiles.el.in: ... here. New file. * configure.ac (AC_CONFIG_FILES): Add "emacs/guix-profiles.el". * emacs.am (nodist_lisp_DATA): Likewise.	8 years ago
Alex Kost	9a130e19fc	emacs: Add 'guix-prettify'. * emacs/guix-prettify.el: New file. * emacs.am (ELFILES): Add it. * doc/emacs.texi (Emacs Prettify): New node. * doc/guix.texi (Features): Mention it.	8 years ago
Alex Kost	fae3d34720	build: Add missing "emacs/guix-messages.el". * emacs.am (ELFILES): Add "emacs/guix-messages.el".	8 years ago
Ludovic Courtès	a9638ac413	build: Don't install elisp files when Emacs is unavailable. * emacs.am (dist_lisp_DATA, nodist_lisp_DATA): Wrap in 'if HAVE_EMACS'.	8 years ago
Ludovic Courtès	596fcbf768	build: Don't generate Emacs autoloads when Emacs is unavailable. Reported by Andreas Enge. * configure.ac: Define 'HAVE_EMACS' Automake conditional. * emacs.am ($(AUTOLOADS)): Wrap in 'if HAVE_EMACS'.	8 years ago
Alex Kost	457f60fa06	Add Emacs user interface. * configure.ac (emacsuidir): New variable. (AC_CONFIG_FILES): Add 'emacs/guix-init.el', 'emacs/guix-helper.scm'. * Makefile.am: Include 'emacs.am'. * emacs.am: New file. * doc/emacs.texi: New file. * doc/guix.texi: Include 'emacs.texi'. * emacs/guix-backend.el: New file. * emacs/guix-base.el: New file. * emacs/guix-helper.scm.in: New file. * emacs/guix-history.el: New file. * emacs/guix-info.el: New file. * emacs/guix-init.el.in: New file. * emacs/guix-list.el: New file. * emacs/guix-main.scm: New file. * emacs/guix-utils.el: New file. * emacs/guix.el: New file.	8 years ago
Ludovic Courtès	c1202fb1f9	guix {system,offload}: Improve reporting of syntax errors. * guix/scripts/system.scm (read-operating-system) <catch handler>: Add case for 'syntax-error'. Correct message for default case. * guix/scripts/offload.scm (build-machines) <catch handler>: Add case for 'syntax-error'. * tests/guix-system.sh: New file. * Makefile.am (SH_TESTS): Add it.	8 years ago
Mark H Weaver	868c923f13	Replace individual scripts with master 'guix' script. * scripts/guix.in: New script. * Makefile.am (bin_SCRIPTS): Add 'scripts/guix'. Remove 'guix-build', 'guix-download', 'guix-import', 'guix-package', and 'guix-gc'. (MODULES): Add 'guix/scripts/build.scm', 'guix/scripts/download.scm', 'guix/scripts/import.scm', 'guix/scripts/package.scm', and 'guix/scripts/gc.scm'. * configure.ac (AC_CONFIG_FILES): Add 'scripts/guix'. Remove 'guix-build', 'guix-download', 'guix-import', 'guix-package', and 'guix-gc'. * guix-build.in, guix-download.in, guix-gc.in, guix-import.in, guix-package.in: Remove shell script boilerplate. Move to guix-COMMAND.in to guix/scripts/COMMAND.scm. Rename module from (guix-COMMAND) to (guix scripts COMMAND). Change "guix-COMMAND" to "guix COMMAND" in usage help string. * pre-inst-env.in: Add "@abs_top_builddir@/scripts" to the front of $PATH. Export $GUIX_UNINSTALLED. * tests/guix-build.sh, tests/guix-daemon.sh, tests/guix-download.sh, tests/guix-gc.sh, tests/guix-package.sh: Use "guix COMMAND" instead of "guix-COMMAND". * doc/guix.texi: Replace all occurrences of "guix-COMMAND" with "guix COMMAND". * po/POTFILES.in: Update.	9 years ago
Mark H Weaver	e49951eb3e	Replace individual scripts with master 'guix' script. * scripts/guix.in: New script. * Makefile.am (bin_SCRIPTS): Add 'scripts/guix'. Remove 'guix-build', 'guix-download', 'guix-import', 'guix-package', and 'guix-gc'. (MODULES): Add 'guix/scripts/build.scm', 'guix/scripts/download.scm', 'guix/scripts/import.scm', 'guix/scripts/package.scm', and 'guix/scripts/gc.scm'. * configure.ac (AC_CONFIG_FILES): Add 'scripts/guix'. Remove 'guix-build', 'guix-download', 'guix-import', 'guix-package', and 'guix-gc'. * guix-build.in, guix-download.in, guix-gc.in, guix-import.in, guix-package.in: Remove shell script boilerplate. Move to guix-COMMAND.in to guix/scripts/COMMAND.scm. Rename module from (guix-COMMAND) to (guix scripts COMMAND). Change "guix-COMMAND" to "guix COMMAND" in usage help string. * pre-inst-env.in: Add "@abs_top_builddir@/scripts" to the front of $PATH. Export $GUIX_UNINSTALLED. * tests/guix-build.sh, tests/guix-daemon.sh, tests/guix-download.sh, tests/guix-gc.sh, tests/guix-package.sh: Use "guix COMMAND" instead of "guix-COMMAND". * doc/guix.texi: Replace all occurrences of "guix-COMMAND" with "guix COMMAND". * po/POTFILES.in: Update.	9 years ago
Ludovic Courtès	233e76769a	Update license headers. Change all license headers, except guix/build/* and ld-wrapper.scm, with this code: (use-modules (guix build utils) (srfi srfi-1)) (fluid-set! %default-port-encoding "UTF-8") (substitute* (remove (lambda (f) (or (string-contains f ".tar.") (string-contains f ".git/") (string-contains f ".so") (string-suffix? ".o" f) (string-suffix? ".a" f) (string-suffix? ".go" f) (string-suffix? ".pdf" f) (string-suffix? ".png" f) (string-suffix? ".info" f) (equal? (basename f) "guix-daemon") (equal? (basename f) "nix-setuid-helper") (string-contains f "nix-upstream/") (string-contains f "distro/packages/bootstrap/"))) (find-files "." "\\.[a-z]+$")) (("^([[:graph:]]+) This file is part of Guix." _ comment-start) (string-append comment-start " This file is part of GNU Guix.")) (("^([[:graph:]]+) Guix --- Nix package management.*" _ comment-start) (string-append comment-start " GNU Guix --- Functional package management for GNU\n")) (("^([[:graph:]]+) Guix is " _ comment-start) (string-append comment-start " GNU Guix is ")) (("^([[:graph:]]+) along with Guix." _ comment-start) (string-append comment-start " along with GNU Guix.")) (("^([[:graph:]]+) Copyright \$C\$" _ comment-start) (string-append comment-start " Copyright ©"))) Change headers using C-style comments manually.	10 years ago
Ludovic Courtès	ec4d308a9e	guix-download: Use code from (guix build download). * guix-download.in (http-fetch, ftp-fetch): Remove. (fetch-and-store): Replace `uri' parameter with `name', for the output file name. Redirect the output of `fetch' to the error port. (guix-download): Call `url-fetch' for all URI schemes except `file'. Handle PATH equal to #f. * guix/download.scm: Export `%mirrors'. * tests/guix-download.sh: Change erroneous URL, because URLs at example.com are all valid redirections.	10 years ago
Ludovic Courtès	352ec143de	guix-download: Add support for file:// URIs. * guix-download.in (fetch-and-store): New procedure. (guix-download): Use it to compute PATH. Call `add-to-store' when a `file' URI scheme is used. * Makefile.am (AM_TESTS_ENVIRONMENT): New variable. * tests/guix-download.sh: Add test.	10 years ago
Ludovic Courtès	ecdb81e159	guix-download: Gracefully handle invalid URIs. * guix-download.in (guix-download): Error out when `string->uri' returns #f. Use `leave' when the scheme is unknown. * tests/guix-download.sh: Add tests.	10 years ago
Ludovic Courtès	37d19403e7	guix-download: Error out when the HTTP response code is not 200. * guix-download.in (http-fetch): Leave with an error message when RESPONSE's code is not 200. * tests/guix-download.sh: New file. * Makefile.am (TESTS): Add it.	10 years ago
Ludovic Courtès	9518856b9b	guix-package: Fix handling of the PACKAGE:OUTPUT syntax. * guix-package.in (guix-package)[find-package]: Return the correct NAME and SUB-DRV when NAME contains #\:. * tests/guix-package.sh (profile): Add test.	10 years ago
Ludovic Courtès	0afdc48532	Add a preliminary `guix-package' command-line tool. * guix-package.in, tests/guix-package.sh: New files. * configure.ac: Output `guix-package'. * Makefile.am (TESTS): Add `tests/guix-package.sh'. (bin_SCRIPTS): Add `guix-package'.	10 years ago
Ludovic Courtès	97298ffae9	build: Add unit test for the `guix-build' command. * tests/guix-build.sh: New file. * Makefile.am (TESTS): Add it. (LOG_COMPILER): Rename to... (SCM_LOG_COMPILER): ... this. Move flags to... (AM_SCM_LOG_FLAGS): ... this. (TEST_EXTENSIONS, SH_LOG_COMPILER, AM_SH_LOG_FLAGS): New variables.	10 years ago

7 Commits (0b0e11a9d8c366ebb345eb59209a7fbf5a1db397)