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gnu: Add python-velocyto.

* gnu/packages/bioinformatics.scm (python-velocyto): New variable.
wip-perl6
Ricardo Wurmus 3 years ago
parent
commit
fd4c7a098a
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  1. 31
      gnu/packages/bioinformatics.scm

31
gnu/packages/bioinformatics.scm

@ -14209,3 +14209,34 @@ short read sequences, removes errors then produces high quality unique
contigs. It then uses paired read information, if available, to retrieve the
repeated areas between contigs.")
(license license:gpl2+)))
(define-public python-velocyto
(package
(name "python-velocyto")
(version "0.17.17")
(source
(origin
(method url-fetch)
(uri (pypi-uri "velocyto" version))
(sha256
(base32
"0fgygyzqgrq32dv6a00biq1p1cwi6kbl5iqblxq1kklj6b2mzmhs"))))
(build-system python-build-system)
(propagated-inputs
`(("python-click" ,python-click)
("python-cython" ,python-cython)
("python-h5py" ,python-h5py)
("python-loompy" ,python-loompy)
("python-matplotlib" ,python-matplotlib)
("python-numba" ,python-numba)
("python-numpy" ,python-numpy)
("python-pandas" ,python-pandas)
("python-pysam" ,python-pysam)
("python-scikit-learn" ,python-scikit-learn)
("python-scipy" ,python-scipy)))
(home-page "https://github.com/velocyto-team/velocyto.py")
(synopsis "RNA velocity analysis for single cell RNA-seq data")
(description
"Velocyto is a library for the analysis of RNA velocity. Velocyto
includes a command line tool and an analysis pipeline.")
(license license:bsd-2)))
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