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gnu: Add r-sva.

* gnu/packages/bioinformatics.scm (r-sva): New variable.
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Raoul Jean Pierre Bonnal 6 years ago
committed by Ricardo Wurmus
parent
commit
dd42a330d1
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  1. 26
      gnu/packages/bioinformatics.scm

26
gnu/packages/bioinformatics.scm

@ -7995,3 +7995,29 @@ immunoprecipitation and target enrichment on small gene panels. Thereby,
CopywriteR constitutes a widely applicable alternative to available copy
number detection tools.")
(license license:gpl2)))
(define-public r-sva
(package
(name "r-sva")
(version "3.22.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "sva" version))
(sha256
(base32
"1wc1fjm6dzlsqqagm43y57w8jh8nsh0r0m8z1p6ximcb5gxqh7hn"))))
(build-system r-build-system)
(propagated-inputs
`(("r-genefilter" ,r-genefilter)))
(home-page "http://bioconductor.org/packages/sva")
(synopsis "Surrogate variable analysis")
(description
"This package contains functions for removing batch effects and other
unwanted variation in high-throughput experiment. It also contains functions
for identifying and building surrogate variables for high-dimensional data
sets. Surrogate variables are covariates constructed directly from
high-dimensional data like gene expression/RNA sequencing/methylation/brain
imaging data that can be used in subsequent analyses to adjust for unknown,
unmodeled, or latent sources of noise.")
(license license:artistic2.0)))
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