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gnu: Add R.

* gnu/packages/statistics.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it
* guix/download.scm (%mirrors): Add CRAN mirrors.
version-0.8.3
Ricardo Wurmus 8 years ago
parent
commit
cb7e486797
  1. 1
      gnu-system.am
  2. 108
      gnu/packages/statistics.scm
  3. 10
      guix/download.scm

1
gnu-system.am

@ -260,6 +260,7 @@ GNU_SYSTEM_MODULES = \
gnu/packages/socat.scm \
gnu/packages/ssh.scm \
gnu/packages/stalonetray.scm \
gnu/packages/statistics.scm \
gnu/packages/swig.scm \
gnu/packages/sxiv.scm \
gnu/packages/synergy.scm \

108
gnu/packages/statistics.scm

@ -0,0 +1,108 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages statistics)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix utils)
#:use-module (guix build-system gnu)
#:use-module (gnu packages)
#:use-module (gnu packages compression)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gtk)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages image)
#:use-module (gnu packages java)
#:use-module (gnu packages maths)
#:use-module (gnu packages pcre)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages readline)
#:use-module (gnu packages texlive)
#:use-module (gnu packages texinfo)
#:use-module (gnu packages which)
#:use-module (gnu packages xorg))
(define-public r
(package
(name "r")
(version "3.1.2")
(source (origin
(method url-fetch)
(uri (string-append "mirror://cran/src/base/R-"
(version-prefix version 1) "/R-"
version ".tar.gz"))
(sha256
(base32
"0ypsm11c7n49pgh2ricyhhpfhas3famscdazzdp2zq70rapm1ldw"))))
(build-system gnu-build-system)
(arguments
`(#:phases
(alist-cons-before
'check 'set-timezone
;; Some tests require the timezone to be set.
(lambda _ (setenv "TZ" "UTC"))
%standard-phases)
#:configure-flags
'("--with-blas"
"--with-lapack"
"--with-cairo"
"--with-libpng"
"--with-jpeglib"
"--with-libtiff"
"--with-ICU"
"--enable-R-shlib"
"--enable-BLAS-shlib"
"--with-system-zlib"
"--with-system-bzlib"
"--with-system-pcre"
"--with-system-tre"
"--with-system-xz")))
(native-inputs
`(("bzip2" ,bzip2)
("perl" ,perl)
("pkg-config" ,pkg-config)
("texlive" ,texlive) ; needed to make vignettes
("texinfo" ,texinfo) ; for building HTML manuals
("which" ,which) ; for tests/Examples/base-Ex.R
("xz" ,xz)))
(inputs
`(("atlas" ,atlas) ; --with-blas
("cairo" ,cairo)
("gfortran" ,gfortran-4.8)
("icu4c" ,icu4c)
("icedtea6" ,icedtea6)
("lapack" ,lapack)
("libjpeg" ,libjpeg)
("libpng" ,libpng)
("libtiff" ,libtiff)
("libxt" ,libxt)
("pcre" ,pcre)
("readline" ,readline)
("zlib" ,zlib)))
(home-page "http://www.r-project.org/")
(synopsis "Environment for statistical computing and graphics")
(description
"R is a language and environment for statistical computing and graphics.
It provides a variety of statistical techniques, such as linear and nonlinear
modeling, classical statistical tests, time-series analysis, classification
and clustering. It also provides robust support for producing
publication-quality data plots. A large amount of 3rd-party packages are
available, greatly increasing its breadth and scope.")
(license license:gpl3+)))

10
guix/download.scm

@ -164,6 +164,16 @@
"ftp://ftp.nara.wide.ad.jp/pub/CPAN/"
"http://mirrors.163.com/cpan/"
"ftp://cpan.mirror.ac.za/")
(cran
;; Arbitrary mirrors from http://cran.r-project.org/mirrors.html
;; This one automatically redirects to servers worldwide
"http://cran.rstudio.com/"
"http://cran.univ-lyon1.fr/"
"http://cran.r-mirror.de/"
"http://cran.ism.ac.jp/"
"http://cran.stat.auckland.ac.nz/"
"http://cran.mirror.ac.za/"
"http://cran.csie.ntu.edu.tw/")
(imagemagick
;; from http://www.imagemagick.org/script/download.php
;; (without mirrors that are unavailable or not up to date)

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