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gnu: Add python-scanpy.

* gnu/packages/bioinformatics.scm (python-scanpy): New variable.
wip-ipfs
Ricardo Wurmus 4 years ago
parent
commit
c7fe888b42
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  1. 36
      gnu/packages/bioinformatics.scm

36
gnu/packages/bioinformatics.scm

@ -13458,3 +13458,39 @@ conversions, region filtering, FASTA sequence extraction and more.")
spliced (back-spliced) sequencing reads, indicative of circular RNA (circRNA)
in RNA-seq data.")
(license license:gpl3))))
(define-public python-scanpy
(package
(name "python-scanpy")
(version "1.2.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "scanpy" version))
(sha256
(base32
"1ak7bxms5a0yvf65prppq2g38clkv7c7jnjbnfpkh3xxv7q512jz"))))
(build-system python-build-system)
(propagated-inputs
`(("python-anndata" ,python-anndata)
("python-igraph" ,python-igraph)
("python-numba" ,python-numba)
("python-joblib" ,python-joblib)
("python-natsort" ,python-natsort)
("python-networkx" ,python-networkx)
("python-statsmodels" ,python-statsmodels)
("python-scikit-learn" ,python-scikit-learn)
("python-matplotlib" ,python-matplotlib)
("python-pandas" ,python-pandas)
("python-scipy" ,python-scipy)
("python-seaborn" ,python-seaborn)
("python-h5py" ,python-h5py)
("python-tables" ,python-tables)))
(home-page "http://github.com/theislab/scanpy")
(synopsis "Single-Cell Analysis in Python.")
(description "Scanpy is a scalable toolkit for analyzing single-cell gene
expression data. It includes preprocessing, visualization, clustering,
pseudotime and trajectory inference and differential expression testing. The
Python-based implementation efficiently deals with datasets of more than one
million cells.")
(license license:bsd-3)))
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