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gnu: Add hdf4

* gnu/packages/maths.scm (hdf4, hdf4-alt): New variables.
* gnu/packages/patches/hdf4-reproducibility.patch: New file.
* gnu/packages/patches/hdf4-shared-fortran.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Co-Authored-By: Jeremy Robst <jpro@bas.ac.uk>

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
wip-deploy
Thomas Danckaert 6 years ago
committed by Ludovic Courtès
parent
commit
becbbefc9b
No known key found for this signature in database GPG Key ID: 90B11993D9AEBB5
  1. 2
      gnu/local.mk
  2. 59
      gnu/packages/maths.scm
  3. 35
      gnu/packages/patches/hdf4-reproducibility.patch
  4. 25
      gnu/packages/patches/hdf4-shared-fortran.patch

2
gnu/local.mk

@ -573,6 +573,8 @@ dist_patch_DATA = \
%D%/packages/patches/gtk3-respect-GUIX_GTK3_PATH.patch \
%D%/packages/patches/gtk3-respect-GUIX_GTK3_IM_MODULE_FILE.patch \
%D%/packages/patches/gtkglext-disable-disable-deprecated.patch \
%D%/packages/patches/hdf4-shared-fortran.patch \
%D%/packages/patches/hdf4-reproducibility.patch \
%D%/packages/patches/hdf5-config-date.patch \
%D%/packages/patches/hdf-eos5-build-shared.patch \
%D%/packages/patches/hdf-eos5-remove-gctp.patch \

59
gnu/packages/maths.scm

@ -445,6 +445,65 @@ computations.")
(home-page "https://github.com/OkoSanto/GCTP")
(license license:public-domain))) ;https://www2.usgs.gov/laws/info_policies.html
(define-public hdf4
(package
(name "hdf4")
(version "4.2.11")
(source
(origin
(method url-fetch)
(uri (string-append "https://support.hdfgroup.org/ftp/HDF/releases/HDF"
version "/src/hdf-" version ".tar.bz2"))
(sha256
(base32 "16yr50j845zlfx20skmw3y75ww77akk9gg0affjqkg66ih5r03mv"))
(patches (search-patches "hdf4-reproducibility.patch"
"hdf4-shared-fortran.patch"))))
(build-system gnu-build-system)
(native-inputs
`(("gfortran" ,gfortran)
("bison" ,bison)
("flex" ,flex)))
(inputs
`(("zlib" ,zlib)
("libjpeg" ,libjpeg)))
(arguments
`(#:parallel-tests? #f
#:configure-flags '("--enable-shared")
#:phases
(modify-phases %standard-phases
(add-before 'configure 'patchbuild
(lambda _
(substitute*
'("mfhdf/hdfimport/testutil.sh.in" "hdf/util/testutil.sh.in")
(("/bin/rm") "rm")
(("/bin/mkdir") "mkdir"))
(substitute* (find-files "." "^Makefile\\.in$")
(("@HDF_BUILD_XDR_TRUE@XDR_ADD = \
-R\\$\\(abs_top_builddir\\)/mfhdf/xdr/\\.libs") "")
(("@HDF_BUILD_SHARED_TRUE@AM_LDFLAGS = \
-R\\$\\(abs_top_builddir\\)/mfhdf/libsrc/\\.libs \
-R\\$\\(abs_top_builddir\\)/hdf/src/\\.libs \\$\\(XDR_ADD\\)") "")))))))
(home-page "https://www.hdfgroup.org/products/hdf4/")
(synopsis
"Library and multi-object file format for storing and managing data")
(description "HDF4 is a library and multi-object file format for storing
and managing data between machines. HDF4 is an older hierarchical data format,
incompatible with HDF5.")
(license
(license:non-copyleft
"https://www.hdfgroup.org/ftp/HDF/HDF_Current/src/unpacked/COPYING"))))
(define-public hdf4-alt
(package
(inherit hdf4)
(name "hdf4-alt")
(arguments
(substitute-keyword-arguments (package-arguments hdf4)
((#:configure-flags flags) `(cons* "--disable-netcdf" ,flags))))
(synopsis
"HDF4 without netCDF API, can be combined with the regular netCDF library")))
(define-public hdf5
(package
(name "hdf5")

35
gnu/packages/patches/hdf4-reproducibility.patch

@ -0,0 +1,35 @@
Remove/patch unreproducible config data.
diff --git a/configure b/configure
index eb9f346..ebab94d 100755
--- a/configure
+++ b/configure
@@ -23163,7 +23163,7 @@ H4_VERSION="`cut -d' ' -f3 $srcdir/README.txt | head -1`"
## Configuration date
- CONFIG_DATE="`date`"
+CONFIG_DATE=`date -u -d "@$SOURCE_DATE_EPOCH"`
## User doing the configuration
CONFIG_USER="`whoami`@`hostname`"
diff --git a/libhdf4.settings.in b/libhdf4.settings.in
index 1d9bbb9..4180d72 100644
--- a/libhdf4.settings.in
+++ b/libhdf4.settings.in
@@ -5,10 +5,10 @@ General Information:
-------------------
HDF4 Version: @H4_VERSION@
Configured on: @CONFIG_DATE@
- Configured by: @CONFIG_USER@
+ Configured by: guix
Configure mode: @CONFIG_MODE@
- Host system: @host_cpu@-@host_vendor@-@host_os@
- Uname information: @UNAME_INFO@
+ Host system: guix
+ Uname information: guix
Libraries: @STATIC_SHARED@
Installation point: @prefix@
--
2.10.0

25
gnu/packages/patches/hdf4-shared-fortran.patch

@ -0,0 +1,25 @@
Allow building a shared library with Fortran.
---
configure | 6 ------
1 file changed, 6 deletions(-)
diff --git a/configure b/configure
index f37d2fa..eb9f346 100755
--- a/configure
+++ b/configure
@@ -6141,12 +6141,6 @@ if test "X${enable_shared}" != "Xyes"; then
enable_shared="no"
fi
-if test "X${enable_shared}" = "Xyes"; then
- if test "X${BUILD_FORTRAN}" = "Xyes"; then
- as_fn_error $? "Cannot build shared fortran libraries. Please configure with --disable-fortran flag." "$LINENO" 5
- fi
-fi
-
{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether ln -s works" >&5
$as_echo_n "checking whether ln -s works... " >&6; }
--
2.10.0
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