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gnu: Add r-delayedarray.

* gnu/packages/bioinformatics.scm (r-delayedarray): New variable.
version-0.13.0
Roel Janssen 5 years ago
parent
commit
71e34e6b5b
No known key found for this signature in database GPG Key ID: C3EC1DCA843072E1
  1. 30
      gnu/packages/bioinformatics.scm

30
gnu/packages/bioinformatics.scm

@ -6678,6 +6678,36 @@ binary variant call (BCF) and compressed indexed tab-delimited (tabix)
files.")
(license license:expat)))
(define-public r-delayedarray
(package
(name "r-delayedarray")
(version "0.2.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "DelayedArray" version))
(sha256
(base32
"0pcsk0f2dg2ldzprs1cccqrk53jrysmm6ccgjj5wh6z3x17g7g2r"))))
(properties
`((upstream-name . "DelayedArray")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-s4vectors" ,r-s4vectors)
("r-iranges" ,r-iranges)
("r-matrixstats" ,r-matrixstats)))
(home-page "http://bioconductor.org/packages/DelayedArray")
(synopsis "Delayed operations on array-like objects")
(description
"Wrapping an array-like object (typically an on-disk object) in a
@code{DelayedArray} object allows one to perform common array operations on it
without loading the object in memory. In order to reduce memory usage and
optimize performance, operations on the object are either delayed or executed
using a block processing mechanism. Note that this also works on in-memory
array-like objects like @code{DataFrame} objects (typically with Rle columns),
@code{Matrix} objects, and ordinary arrays and data frames.")
(license license:artistic2.0)))
(define-public r-summarizedexperiment
(package
(name "r-summarizedexperiment")

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