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gnu: Add r-mzid.

* gnu/packages/bioinformatics.scm (r-mzid): New variable.
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Ricardo Wurmus 5 years ago
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  1. 30
      gnu/packages/bioinformatics.scm

30
gnu/packages/bioinformatics.scm

@ -8363,3 +8363,33 @@ analogous to \"normalized log-ratios\". However, in contrast to the latter,
their variance is independent of the mean, and they are usually more sensitive
and specific in detecting differential transcription.")
(license license:artistic2.0)))
(define-public r-mzid
(package
(name "r-mzid")
(version "1.12.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "mzID" version))
(sha256
(base32
"1zn896cpfvqp1qmq5c4vcj933hb8rxwb6gkck1wqvr7393rpqy1q"))))
(properties `((upstream-name . "mzID")))
(build-system r-build-system)
(propagated-inputs
`(("r-doparallel" ,r-doparallel)
("r-foreach" ,r-foreach)
("r-iterators" ,r-iterators)
("r-plyr" ,r-plyr)
("r-protgenerics" ,r-protgenerics)
("r-rcpp" ,r-rcpp)
("r-xml" ,r-xml)))
(home-page "http://bioconductor.org/packages/mzID")
(synopsis "Parser for mzIdentML files")
(description
"This package provides a parser for mzIdentML files implemented using the
XML package. The parser tries to be general and able to handle all types of
mzIdentML files with the drawback of having less pretty output than a vendor
specific parser.")
(license license:gpl2+)))
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