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gnu: Add OrfM.

* gnu/packages/bioinformatics.scm (orfm): New variable.

Signed-off-by: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
gn-latest-20200428
Ben Woodcroft 6 years ago
committed by Ricardo Wurmus
parent
commit
1e44cf8b0f
  1. 21
      gnu/packages/bioinformatics.scm

21
gnu/packages/bioinformatics.scm

@ -1101,6 +1101,27 @@ RNA-Seq, the MISO model uses Bayesian inference to compute the probability
that a read originated from a particular isoform.")
(license license:gpl2)))
(define-public orfm
(package
(name "orfm")
(version "0.3.2")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/wwood/OrfM/releases/download/v"
version "/orfm-" version ".tar.gz"))
(sha256
(base32
"00jqvlspj9662ni9r4n1snxfnwkzc02i46g5nk1kwjshi6v3vgg3"))))
(build-system gnu-build-system)
(inputs `(("zlib" ,zlib)))
(synopsis "Simple and not slow open reading frame (ORF) caller")
(description
"An ORF caller finds stretches of DNA that when translated are not
interrupted by stop codons. OrfM finds and prints these ORFs.")
(home-page "https://github.com/wwood/OrfM")
(license license:lgpl3+)))
(define-public python2-pbcore
(package
(name "python2-pbcore")

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