guix/gnu/packages/python-xyz.scm

;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org>
;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2013, 2014, 2015, 2016, 2019 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2014, 2015 Mark H Weaver <mhw@netris.org>
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;;; Copyright © 2014, 2015 Federico Beffa <beffa@fbengineering.ch>
;;; Copyright © 2015 Omar Radwan <toxemicsquire4@gmail.com>
;;; Copyright © 2015 Pierre-Antoine Rault <par@rigelk.eu>
;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016 Christopher Allan Webber <cwebber@dustycloud.org>
;;; Copyright © 2015 Eric Dvorsak <eric@dvorsak.fr>
;;; Copyright © 2015, 2016 David Thompson <davet@gnu.org>
;;; Copyright © 2015, 2016, 2017, 2019 Leo Famulari <leo@famulari.name>
;;; Copyright © 2015, 2017 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2015, 2016 Erik Edrosa <erik.edrosa@gmail.com>
;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2015, 2017 Kyle Meyer <kyle@kyleam.com>
;;; Copyright © 2015, 2016 Chris Marusich <cmmarusich@gmail.com>
;;; Copyright © 2016 Danny Milosavljevic <dannym+a@scratchpost.org>
;;; Copyright © 2016 Lukas Gradl <lgradl@openmailbox.org>
;;; Copyright © 2016, 2018-2019 Hartmut Goebel <h.goebel@crazy-compilers.com>
;;; Copyright © 2016 Daniel Pimentel <d4n1@d4n1.org>
;;; Copyright © 2016 Sou Bunnbu <iyzsong@gmail.com>
;;; Copyright © 2016, 2017 Troy Sankey <sankeytms@gmail.com>
;;; Copyright © 2016, 2017 ng0 <ng0@n0.is>
;;; Copyright © 2016 Dylan Jeffers <sapientech@sapientech@openmailbox.org>
;;; Copyright © 2016 David Craven <david@craven.ch>
;;; Copyright © 2016, 2017, 2018, 2019, 2020 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2016, 2017 Stefan Reichör <stefan@xsteve.at>
;;; Copyright © 2016 Dylan Jeffers <sapientech@sapientech@openmailbox.org>
;;; Copyright © 2016, 2017, 2019 Alex Vong <alexvong1995@gmail.com>
;;; Copyright © 2016, 2017, 2018 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2016, 2017, 2018, 2020 Julien Lepiller <julien@lepiller.eu>
;;; Copyright © 2016, 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be>
;;; Copyright © 2017 Carlo Zancanaro <carlo@zancanaro.id.au>
;;; Copyright © 2017 Frederick M. Muriithi <fredmanglis@gmail.com>
;;; Copyright © 2017, 2018 Adriano Peluso <catonano@gmail.com>
;;; Copyright © 2017 Ben Sturmfels <ben@sturm.com.au>
;;; Copyright © 2017, 2018, 2019 Mathieu Othacehe <m.othacehe@gmail.com>
;;; Copyright © 2017 José Miguel Sánchez García <jmi2k@openmailbox.org>
;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
;;; Copyright © 2017, 2018, 2019 Kei Kebreau <kkebreau@posteo.net>
;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com>
;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com>
;;; Copyright © 2017, 2019 Brendan Tildesley <mail@brendan.scot>
;;; Copyright © 2018 Ethan R. Jones <ethanrjones97@gmail.com
;;; Copyright © 2018 Fis Trivial <ybbs.daans@hotmail.com>
;;; Copyright © 2018 Vijayalakshmi Vedantham <vijimay12@gmail.com>
;;; Copyright © 2018 Mathieu Lirzin <mthl@gnu.org>
;;; Copyright © 2018 Adam Massmann <massmannak@gmail.com>
;;; Copyright © 2016, 2018 Tomáš Čech <sleep_walker@gnu.org>
;;; Copyright © 2018, 2019, 2020 Nicolas Goaziou <mail@nicolasgoaziou.fr>
;;; Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com>
;;; Copyright © 2018, 2019 Clément Lassieur <clement@lassieur.org>
;;; Copyright © 2018, 2019, 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2018 Luther Thompson <lutheroto@gmail.com>
;;; Copyright © 2018 Vagrant Cascadian <vagrant@debian.org>
;;; Copyright © 2019, 2020 Brett Gilio <brettg@gnu.org>
;;; Copyright © 2019 Sam <smbaines8@gmail.com>
;;; Copyright © 2019 Jack Hill <jackhill@jackhill.us>
;;; Copyright © 2019 Guillaume Le Vaillant <glv@posteo.net>
;;; Copyright © 2019 Alex Griffin <a@ajgrf.com>
;;; Copyright © 2019 Pierre Langlois <pierre.langlois@gmx.com>
;;; Copyright © 2019 Jacob MacDonald <jaccarmac@gmail.com>
;;; Copyright © 2019 Giacomo Leidi <goodoldpaul@autistici.org>
;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz>
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;;; Copyright © 2019 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
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;;;
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(define-module (gnu packages python-xyz)
  #:use-module ((guix licenses) #:prefix license:)
  #:use-module (gnu packages)
  #:use-module (gnu packages algebra)
  #:use-module (gnu packages adns)
  #:use-module (gnu packages attr)
  #:use-module (gnu packages backup)
  #:use-module (gnu packages bash)
  #:use-module (gnu packages check)
  #:use-module (gnu packages compression)
  #:use-module (gnu packages crypto)
  #:use-module (gnu packages databases)
  #:use-module (gnu packages dbm)
  #:use-module (gnu packages enchant)
  #:use-module (gnu packages file)
  #:use-module (gnu packages fontutils)
  #:use-module (gnu packages gcc)
  #:use-module (gnu packages geo)
  #:use-module (gnu packages ghostscript)
  #:use-module (gnu packages gl)
  #:use-module (gnu packages glib)
  #:use-module (gnu packages gnome)
  #:use-module (gnu packages graphviz)
  #:use-module (gnu packages graphics)
  #:use-module (gnu packages gstreamer)
  #:use-module (gnu packages gtk)
  #:use-module (gnu packages icu4c)
  #:use-module (gnu packages image)
  #:use-module (gnu packages imagemagick)
  #:use-module (gnu packages kerberos)
  #:use-module (gnu packages libevent)
  #:use-module (gnu packages libffi)
  #:use-module (gnu packages linux)
  #:use-module (gnu packages llvm)
  #:use-module (gnu packages man)
  #:use-module (gnu packages maths)
  #:use-module (gnu packages monitoring)
  #:use-module (gnu packages multiprecision)
  #:use-module (gnu packages networking)
  #:use-module (gnu packages ncurses)
  #:use-module (gnu packages openstack)
  #:use-module (gnu packages pcre)
  #:use-module (gnu packages perl)
  #:use-module (gnu packages pkg-config)
  #:use-module (gnu packages python)
  #:use-module (gnu packages python-check)
  #:use-module (gnu packages python-compression)
  #:use-module (gnu packages python-crypto)
  #:use-module (gnu packages python-science)
  #:use-module (gnu packages python-web)
  #:use-module (gnu packages qt)
  #:use-module (gnu packages readline)
  #:use-module (gnu packages sdl)
  #:use-module (gnu packages search)
  #:use-module (gnu packages shells)
  #:use-module (gnu packages sphinx)
  #:use-module (gnu packages ssh)
  #:use-module (gnu packages terminals)
  #:use-module (gnu packages tex)
  #:use-module (gnu packages texinfo)
  #:use-module (gnu packages time)
  #:use-module (gnu packages tls)
  #:use-module (gnu packages version-control)
  #:use-module (gnu packages video)
  #:use-module (gnu packages web)
  #:use-module (gnu packages base)
  #:use-module (gnu packages xml)
  #:use-module (gnu packages xorg)
  #:use-module (gnu packages xdisorg)
  #:use-module (gnu packages tcl)
  #:use-module (gnu packages bdw-gc)
  #:use-module (gnu packages serialization)
  #:use-module (guix packages)
  #:use-module (guix download)
  #:use-module (guix git-download)
  #:use-module (guix hg-download)
  #:use-module (guix utils)
  #:use-module (guix build-system gnu)
  #:use-module (guix build-system cmake)
  #:use-module (guix build-system python)
  #:use-module (guix build-system trivial)
  #:use-module (srfi srfi-1)
  #:use-module (srfi srfi-26))

(define-public python-psutil
  (package
    (name "python-psutil")
    (version "5.6.5")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "psutil" version))
       (sha256
        (base32 "0isil5jxwwd8awz54qk28rpgjg43i5l6yl70g40vxwa4r4m56lfh"))))
    (build-system python-build-system)
    (arguments
     ;; FIXME: some tests does not return and times out.
     '(#:tests? #f))
    (home-page "https://www.github.com/giampaolo/psutil")
    (synopsis "Library for retrieving information on running processes")
    (description
     "psutil (Python system and process utilities) is a library for retrieving
information on running processes and system utilization (CPU, memory, disks,
network) in Python.  It is useful mainly for system monitoring, profiling and
limiting process resources and management of running processes.  It implements
many functionalities offered by command line tools such as: ps, top, lsof,
netstat, ifconfig, who, df, kill, free, nice, ionice, iostat, iotop, uptime,
pidof, tty, taskset, pmap.")
    (properties `((python2-variant . ,(delay python2-psutil))))
    (license license:bsd-3)))

(define-public python2-psutil
  (let ((base (package-with-python2 (strip-python2-variant python-psutil))))
    (package
      (inherit base)
      (propagated-inputs
       `(("python2-enum34" ,python2-enum34)         ;optional
         ,@(package-propagated-inputs base))))))

(define-public python-shapely
  (package
    (name "python-shapely")
    (version "1.6.4.post2")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "Shapely" version))
       (sha256
        (base32
         "03r42fmd9alp6r3q95ad6rldq2f7n1wimrw53zy5kpn33yv7pf64"))))
    (build-system python-build-system)
    (native-inputs
     `(("python-cython" ,python-cython)
       ("python-matplotlib" ,python-matplotlib)
       ("python-pytest" ,python-pytest)
       ("python-pytest-cov" ,python-pytest-cov)))
    (inputs
     `(("geos" ,geos)))
    (propagated-inputs
     `(("python-numpy" ,python-numpy)))
    (arguments
     `(#:phases
       (modify-phases %standard-phases
         (add-after 'unpack 'patch-geos-path
           (lambda* (#:key inputs #:allow-other-keys)
             (let ((geos (assoc-ref inputs "geos"))
                   (glibc (assoc-ref inputs ,(if (%current-target-system)
                                                 "cross-libc" "libc"))))
               (substitute* "shapely/geos.py"
                 (("_lgeos = load_dll\\('geos_c', fallbacks=.*\\)")
                  (string-append "_lgeos = load_dll('geos_c', fallbacks=['"
                                 geos "/lib/libgeos_c.so'])"))
                 (("free = load_dll\\('c'\\)\\.free")
                  (string-append "free = load_dll('c', fallbacks=['"
                                 glibc "/lib/libc.so.6']).free"))))
             #t)))))
    (home-page "https://github.com/Toblerity/Shapely")
    (synopsis "Library for the manipulation and analysis of geometric objects")
    (description "Shapely is a Python package for manipulation and analysis of
planar geometric objects.  It is based on the @code{GEOS} library.")
    (license license:bsd-3)))

(define-public python-shortuuid
  (package
    (name "python-shortuuid")
    (version "0.5.0")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "shortuuid" version))
       (sha256
        (base32
         "1f8i4zwj5vmpzbz6b17bljy4399gx5aq7vsyw63sz2qgyjcd73yh"))))
    (build-system python-build-system)
    (native-inputs
     `(("python-pep8" ,python-pep8)))
    (home-page "https://github.com/skorokithakis/shortuuid")
    (synopsis "Generator library for concise, unambiguous and URL-safe UUIDs")
    (description
     "@code{shortuuid} is a Python library for generating concise, unambiguous
and URL-safe UUIDs.  UUIDs are generated using the built-in Python @code{uuid}
module and then similar looking characters are removed.")
    (license license:bsd-3)))

(define-public python-logwrap
  (package
    (name "python-logwrap")
    (version "3.2.1")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "logwrap" version ".zip"))
       (sha256
        (base32
         "1d2k0hvpbi51vl410y8fbs5m0nxnlh2k7gr2nrh3k81ibhzscsra"))))
    (build-system python-build-system)
    (propagated-inputs
     `(("python-six" ,python-six)
       ("python-typing" ,python-typing)))
    (native-inputs
     `(("unzip" ,unzip)
       ("python-cython" ,python-cython)
       ("python-pytest" ,python-pytest)
       ("python-pytest-cov" ,python-pytest-cov)
       ("python-pytest-runner" ,python-pytest-runner)))
    (home-page "https://github.com/penguinolog/logwrap")
    (synopsis "Decorator for logging function arguments")
    (description "This package provides a decorator to log function arguments
and function call return values in a human-readable way.")
    (license license:asl2.0)))

(define-public python2-shapely
  (package-with-python2 python-shapely))

(define-public python-clyent
  (package
    (name "python-clyent")
    (version "1.2.1")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "clyent" version))
       (sha256
        (base32
         "1r9987qmy1pz3hq54160bapqsywpq14waw4w9x3ly8hmq7kpgfbj"))))
    (build-system python-build-system)
    (native-inputs
     `(("python-mock" ,python-mock)))
    (home-page "https://github.com/binstar/clyent")
    (synopsis "Command line client library")
    (description "Clyent is a Python command line utiliy library.  It is used
by @code{binstar}, @code{binstar-build} and @code{chalmers}.")
    (license license:bsd-3)))

(define-public python2-clyent
  (package-with-python2 python-clyent))

(define-public python-babel
  (package
    (name "python-babel")
    (version "2.7.0")
    (source
     (origin
      (method url-fetch)
      (uri (pypi-uri "Babel" version))
      (sha256
       (base32
        "0a7wawx8vsg7igvz6p3x909fskhg4b2y1910xk4f4c8y22p3aqg8"))))
    (build-system python-build-system)
    (native-inputs
     `(("python-freezegun" ,python-freezegun)
       ("python-pytest" ,python-pytest)))
    (propagated-inputs
     `(("python-pytz" ,python-pytz)))
    (arguments
     `(#:phases (modify-phases %standard-phases
                  (replace 'check
                    (lambda _
                      (invoke "pytest" "-vv" "-k"
                              (string-append
                               ;; XXX: These tests fail when using Pytest 4.x and
                               ;; Babel 2.6.0.  Try removing this for later versions.
                               "not test_no_inherit_metazone_marker_never_in_output"
                               " and not test_smoke_dates"
                               " and not test_smoke_numbers")))))))
    (home-page "http://babel.pocoo.org/")
    (synopsis
     "Tools for internationalizing Python applications")
    (description
     "Babel is composed of two major parts:
- tools to build and work with gettext message catalogs
- a Python interface to the CLDR (Common Locale Data Repository), providing
access to various locale display names, localized number and date formatting,
etc. ")
    (license license:bsd-3)))

(define-public python2-babel
  (package-with-python2 python-babel))

;; Sphinx < 2.0 requires this version.  Remove once no longer needed.
(define-public python2-babel-2.6
  (package
    (inherit python2-babel)
    (version "2.6.0")
    (source (origin
              (method url-fetch)
              (uri (pypi-uri "Babel" version))
              (sha256
               (base32
                "08rxmbx2s4irp0w0gmn498vns5xy0fagm0fg33xa772jiks51flc"))))))

(define-public python2-backport-ssl-match-hostname
  (package
    (name "python2-backport-ssl-match-hostname")
    (version "3.5.0.1")
    (source
     (origin
      (method url-fetch)
      (uri (pypi-uri "backports.ssl_match_hostname" version))
      (sha256
       (base32
        "1wndipik52cyqy0677zdgp90i435pmvwd89cz98lm7ri0y3xjajh"))))
    (build-system python-build-system)
    (arguments
     `(#:python ,python-2
       #:tests? #f)) ; no test target
    (home-page "https://bitbucket.org/brandon/backports.ssl_match_hostname")
    (synopsis "Backport of ssl.match_hostname() function from Python 3.5")
    (description
     "This backport brings the ssl.match_hostname() function to users of
earlier versions of Python.  The function checks the hostname in the
certificate returned by the server to which a connection has been established,
and verifies that it matches the intended target hostname.")
    (license license:psfl)))

(define-public python-boolean.py
  (package
    (name "python-boolean.py")
    (version "3.6")
    (source
     (origin
       ;; There's no source tarball on PyPI.
       (method git-fetch)
       (uri (git-reference
             (url "https://github.com/bastikr/boolean.py")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
        (base32 "1wc89y73va58cj7dsx6c199zpxsy9q53dsffsdj6zmc90inqz6qs"))))
    (build-system python-build-system)
    (home-page "https://github.com/bastikr/boolean.py")
    (synopsis "Boolean algebra in one Python module")
    (description
     "This is a small Python library that implements boolean algebra.
It defines two base elements, @code{TRUE} and @code{FALSE}, and a
@code{Symbol} class that can take on one of these two values.  Calculations
are done only in terms of @code{AND}, @code{OR}, and @code{NOT}---other
compositions like @code{XOR} and @code{NAND} are emulated on top of them.
Expressions are constructed from parsed strings or directly in Python.")
    (license license:bsd-2)))

(define-public python-hdf4
  (package
   (name "python-hdf4")
   (version "0.9")
   (source
    (origin
      (method url-fetch)
      (uri (pypi-uri name version))
      (sha256
       (base32
        "1hjiyrxvxk9817qyqky3nar4y3fs4z8wxz0n884zzb5wi6skrjks"))))
   (build-system python-build-system)
   (native-inputs `(("nose" ,python-nose)))
   (propagated-inputs `(("numpy" ,python-numpy)))
   (inputs
    `(("hdf4" ,hdf4)
      ("libjpeg" ,libjpeg)
      ("zlib" ,zlib)))
   (arguments
    `(#:phases
      (modify-phases %standard-phases
        (replace 'check
          (lambda _
            ;; The 'runexamples' script sets PYTHONPATH to CWD, then goes
            ;; on to import numpy. Somehow this works on their CI system.
            ;; Let's just manage PYTHONPATH here instead.
            (substitute* "runexamples.sh"
              (("export PYTHONPATH=.*") ""))
            (setenv "PYTHONPATH"
                    (string-append (getcwd) ":"
                                   (getenv "PYTHONPATH")))
            (invoke "./runexamples.sh")
            (invoke "nosetests" "-v"))))))
   (home-page "https://github.com/fhs/python-hdf4")
   (synopsis "Python interface to the NCSA HDF4 library")
   (description
    "Python-HDF4 is a python wrapper around the NCSA HDF version 4 library,
which implements the SD (Scientific Dataset), VS (Vdata) and V (Vgroup) API’s.
NetCDF files can also be read and modified.  Python-HDF4 is a fork of
@url{http://hdfeos.org/software/pyhdf.php,pyhdf}.")
   (license license:expat)))

(define-public python2-hdf4
  (package-with-python2 python-hdf4))

(define-public python-h5py
  (package
    (name "python-h5py")
    (version "2.8.0")
    (source
     (origin
      (method url-fetch)
      (uri (pypi-uri "h5py" version))
      (sha256
       (base32
        "0mdr6wrq02ac93m1aqx9kad0ppfzmm4imlxqgyy1x4l7hmdcc9p6"))))
    (build-system python-build-system)
    (arguments
     `(#:tests? #f ; no test target
       #:phases
       (modify-phases %standard-phases
         (add-after 'unpack 'fix-hdf5-paths
          (lambda* (#:key inputs #:allow-other-keys)
            (let ((prefix (assoc-ref inputs "hdf5")))
              (substitute* "setup_build.py"
                (("\\['/opt/local/lib', '/usr/local/lib'\\]")
                 (string-append "['" prefix "/lib" "']"))
                (("'/opt/local/include', '/usr/local/include'")
                 (string-append "'" prefix "/include" "'")))
              (substitute* "setup_configure.py"
                (("\\['/usr/local/lib', '/opt/local/lib'\\]")
                 (string-append "['" prefix "/lib" "']")))
              #t))))))
    (propagated-inputs
     `(("python-six" ,python-six)
       ("python-numpy" ,python-numpy)))
    (inputs
     `(("hdf5" ,hdf5)))
    (native-inputs
     `(("python-cython" ,python-cython)
       ("python-pkgconfig" ,python-pkgconfig)))
    (home-page "https://www.h5py.org/")
    (synopsis "Read and write HDF5 files from Python")
    (description
     "The h5py package provides both a high- and low-level interface to the
HDF5 library from Python.  The low-level interface is intended to be a
complete wrapping of the HDF5 API, while the high-level component supports
access to HDF5 files, datasets and groups using established Python and NumPy
concepts.")
    (license license:bsd-3)))

(define-public python2-h5py
  (package-with-python2 python-h5py))

(define-public python-sh
  (package
    (name "python-sh")
    (version "1.12.14")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "sh" version))
       (sha256
        (base32
         "1z2hx357xp3v4cv44xmqp7lli3frndqpyfmpbxf7n76h7s1zaaxm"))))
    (build-system python-build-system)
    (arguments
     '(#:phases
       (modify-phases %standard-phases
         (replace 'check
           (lambda _
             ;; XXX: A Python 2 test fails when HOME=/homeless-shelter.
             (setenv "HOME" "/tmp")
             (invoke "python" "sh.py" "test"))))))
    (native-inputs
     `(("python-coverage" ,python-coverage)))
    (home-page "https://github.com/amoffat/sh")
    (synopsis "Python subprocess replacement")
    (description "This package provides a replacement for Python's
@code{subprocess} feature.")
    (license license:expat)))

(define-public python2-sh
  (package-with-python2 python-sh))

(define-public python-cftime
  (package
    (name "python-cftime")
    (version "1.0.4.2")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "cftime" version))
       (sha256
        (base32 "0w0gi6jnch38hiygl62j4xkcirv4y3dcwrvxl9p7bsk6j27lzihs"))))
    (build-system python-build-system)
    (propagated-inputs
     `(("python-numpy" ,python-numpy)))
    (native-inputs
     `(("python-coveralls" ,python-coveralls)
       ("python-cython" ,python-cython)
       ("python-pytest-cov" ,python-pytest-cov)))
    (home-page "https://github.com/Unidata/cftime")
    (synopsis "Library for time handling")
    (description
     "This package provides time-handling functionality that used to be part
of the netcdf4 package before.")
    ;; This package claims to include code under the GPLv3 but is released
    ;; under ISC.
    (license (list license:isc license:gpl3+))))

(define-public python-netcdf4
  (package
    (name "python-netcdf4")
    (version "1.4.2")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "netCDF4" version))
       (sha256
        (base32
         "0c0sklgrmv15ygliin8qq0hp7vanmbi74m6zpi0r1ksr0hssyd5r"))))
    (build-system python-build-system)
    (arguments
     '(#:phases
       (modify-phases %standard-phases
         (add-after 'unpack 'configure-locations
           (lambda* (#:key inputs #:allow-other-keys)
             (setenv "HDF5_DIR" (assoc-ref inputs "hdf5"))
             #t)))))
    (native-inputs
     `(("python-cython" ,python-cython)))
    (propagated-inputs
     `(("python-numpy" ,python-numpy)
       ("python-cftime" ,python-cftime)))
    (inputs
     `(("netcdf" ,netcdf)
       ("hdf4" ,hdf4)
       ("hdf5" ,hdf5)))
    (home-page "https://github.com/Unidata/netcdf4-python")
    (synopsis "Python/numpy interface to the netCDF library")
    (description "Netcdf4-python is a Python interface to the netCDF C
library.  netCDF version 4 has many features not found in earlier
versions of the library and is implemented on top of HDF5.  This module
can read and write files in both the new netCDF 4 and the old netCDF 3
format, and can create files that are readable by HDF5 clients.  The
API is modelled after @code{Scientific.IO.NetCDF}, and should be familiar
to users of that module.")
    ;; The software is mainly ISC, but includes some files covered
    ;; by the Expat license.
    (license (list license:isc license:expat))))

(define-public python2-netcdf4
  (package-with-python2 python-netcdf4))

(define-public python-license-expression
  (package
    (name "python-license-expression")
    (version "0.999")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "license-expression" version))
       (sha256
        (base32 "08ppb0bxbrsxazy88sgpl9yffvdsabw6dkk1nc332wcz2mphwwyf"))))
    (build-system python-build-system)
    (propagated-inputs
     `(("python-boolean.py" ,python-boolean.py)))
    (home-page "https://github.com/nexB/license-expression")
    (synopsis "Apply boolean logic to license expressions")
    (description
     "This Python module defines a tiny language to evaluate and compare
license expressions using boolean logic.  Logical combinations of licenses can
be tested for equality, containment, and equivalence.  They can be normalised
and simplified.  It supports SPDX license expressions as well as other naming
conventions and aliases in the same expression.")
    (license license:gpl2+)))

(define-public python-lockfile
  (package
    (name "python-lockfile")
    (version "0.12.2")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "lockfile" version))
       (sha256
        (base32
         "16gpx5hm73ah5n1079ng0vy381hl802v606npkx4x8nb0gg05vba"))))
    (build-system python-build-system)
    (arguments '(#:test-target "check"))
    (native-inputs
     `(("python-pbr" ,python-pbr)))
    (home-page "https://launchpad.net/pylockfile")
    (synopsis "Platform-independent file locking module")
    (description
     "The lockfile package exports a LockFile class which provides a simple
API for locking files.")
    (license license:expat)))

(define-public python2-lockfile
  (package-with-python2 python-lockfile))

(define-public python-semantic-version
  (package
    (name "python-semantic-version")
    (version "2.6.0")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "semantic_version" version))
       (sha256
        (base32
         "1h2l9xyg1zzsda6kjcmfcgycbvrafwci283vcr1v5sbk01l2hhra"))))
    (build-system python-build-system)
    (arguments
     `(#:tests? #f))                    ; PyPI tarball lacks tests
    (home-page "https://github.com/rbarrois/python-semanticversion")
    (synopsis "Semantic versioning module for Python")
    (description