Efraim Flashner
75e92b9503
kaleido builds and installs
9 months ago
Efraim Flashner
b8891af429
WIP kaleido
9 months ago
Efraim Flashner
76d726a77e
WIP kaleido
9 months ago
Efraim Flashner
e979f3e271
WIP packaging (python-)kaleido
9 months ago
7d29f66403
gn: Add r-wgcna, r-rjson to genenetwork3.
* gn/packages/genenetwork.scm(genenetwork3) [propagated-inputs]: Add r-wgcna an r-rjson
9 months ago
Bonface Munyoki
e80fe4ddcf
gn: javascript-font-awesome: Add "webfonts" directory
* gn/packages/javascript.scm (javascript-font-awesome)[arguments]: Copy
font-awesome directory to the target directory.
9 months ago
Efraim Flashner
5f66ae588b
gn: julia packaging updates, for upstreaming
10 months ago
Efraim Flashner
0684b02dac
gn: Use known good binary version of direct.so for genenetwork1
10 months ago
Efraim Flashner
8bd585606b
gn: julia updates
10 months ago
Efraim Flashner
6b358542f5
gn: prep for more julia package upstreaming
10 months ago
Efraim Flashner
90b466488a
Adjust to new multi-target bootloader configs
10 months ago
Erik Garrison
b0d23a9508
update pangenie
10 months ago
Efraim Flashner
78e68d7f60
gn: update genecup to 1.6.
10 months ago
01cbe5a2e9
Moved packages into past/genenetwork1 and packages/pangenome to reduce chance of
breaking the main genenetwork packages.
10 months ago
eb97761d7f
Remove golang module loader
10 months ago
82d0c5cc93
genenetwork[23]: updated git checkout and commented out DAG generation
10 months ago
c47ed18241
Removed tls warning
10 months ago
cabac15be8
Removed tls to remove warnings
10 months ago
9565dbbf4e
gemma: bump to 0.98.5-pre
10 months ago
cffb080134
gemma-wrapper: update to 0.99.3
10 months ago
Efraim Flashner
e1b776b1d7
gn: Add missing import
11 months ago
Efraim Flashner
6b05f2e196
gn: make sure we use the correct rust version
11 months ago
Bonface Munyoki
ac3cdf57e7
Remove csv-diff from channel.
This is already packaged upstream.
* gn/packages/genenetwork.scm: Remove "(gn packages golang)" import.
* gn/packages/golang.scm: Delete file.
11 months ago
Bonface Munyoki
495712f5d0
gn: Add toolbar overlay for debugging genenetwork2
* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add
python-flask-debugtoolbar
11 months ago
Bonface Munyoki
55e6f9dd0d
gn: Add python-flask-debugtoolbar.
* gn/packages/python.scm (python-flask-debugtoolbar): New variable.
11 months ago
Efraim Flashner
fef68e9c57
gn: start moving calculated files to build separately
11 months ago
Efraim Flashner
d7e42fd848
openssl-1.0 deprecated upstream, moved to guix-past
11 months ago
Efraim Flashner
5a810426d7
gn: genenetwork2: Don't hardcode python version.
11 months ago
Bonface Munyoki
9d62e687b3
gn: genenetwork: Remove "#:python ,python-wrapper" from "arguments"
This fixes this error:
guix package: error: /home/bonface/projects/guix-bioinformatics/gn/packages/genenetwork.scm:295:4: package `genenetwork2@3.11-guix-84cbf35' has an invalid input: ("python" python-wrapper)
11 months ago
Efraim Flashner
b6761f9779
gn: Update gitea to 1.14.6.
11 months ago
Efraim Flashner
ba96f981eb
gn: fix genenetwork2 package definition
11 months ago
Efraim Flashner
8ad9768e05
gn: Add pirs.
11 months ago
Efraim Flashner
08d32dfa56
gn: Add pbsim2.
11 months ago
Efraim Flashner
4de2b7e3fa
gn: Add pangenie.
11 months ago
Efraim Flashner
ee9e292453
fixup genenetwork2
11 months ago
Efraim Flashner
4865664348
gn: Adjust genenetwork2 for removal of python2-genenetwork2
11 months ago
f46cc3c4fb
gemma.scm: muck out old stuff
11 months ago
3442513854
python2-genenetwork2: remove unused Python2 version of genenetwork
11 months ago
cdf65fa27f
shunit2: rename to shunit2-old, so as not to conflict with upstream
11 months ago
Bonface Munyoki
8fd543b687
gn: Update genenetwork3 to 0.0.1-guix-487e50e
11 months ago
Efraim Flashner
1430f96afe
gn: Upstream some rust crates
11 months ago
Bonface Munyoki
c1e1bf49b9
gn: genenetwork3: Add csvdiff as a propagated input
11 months ago
Erik Garrison
f7a739461e
clarify that this is an old seqwish
11 months ago
Efraim Flashner
095e987300
gn: gfaffix: Don't hardcode rust-handlegraph package version
11 months ago
Efraim Flashner
20dd6613c8
gn: rust-handlegraph-0.7: Update to 0.7.0-alpha.9.
11 months ago
Erik Garrison
b59473e017
actually update handlegraph
11 months ago
Erik Garrison
2fd5cecd21
get bugfix in rs-handlegraph
11 months ago
Efraim Flashner
4fc3b330b2
gn: code updates
11 months ago
Efraim Flashner
2e3c2a1df0
gn: Add gfaffix.
11 months ago
Efraim Flashner
84022eeab3
code updates
11 months ago
Alexander Kabui
