Efraim Flashner
22dd59cd67
gn: Add octave@3.4.3.
Add two upstream patches and package glpk@4.48 for octave to use.
3 years ago
Efraim Flashner
faedb91fb2
gn: Add python24-pp.
3 years ago
Efraim Flashner
4c2d42ffb0
gn: Add python24-numarray.
3 years ago
Efraim Flashner
52b1d76a78
gn: Add python24-simplejson.
3 years ago
Efraim Flashner
44d85ed9e5
gn: add python24-piddle.
3 years ago
Efraim Flashner
bd76831ad1
gn: add python24-pil.
3 years ago
Efraim Flashner
b8b07d916a
gn: Add python24-pyxlwriter.
3 years ago
Efraim Flashner
18e08e242d
gn: Add python24-pyx.
3 years ago
Efraim Flashner
eac64d6ae8
gn: Add python24-asserts.
3 years ago
Efraim Flashner
04ab1dc462
gn: Add python24-htmlgen.
3 years ago
Efraim Flashner
5c10110858
gn: Add python24-setuptools.
3 years ago
Efraim Flashner
7d7f7dba9b
gn: prepare to package with python2.4.
3 years ago
Efraim Flashner
5bb2c01f50
gn: python24: Link to other libraries.
3 years ago
Efraim Flashner
936cbf0156
gn: move python2.4 to its own module
3 years ago
Efraim Flashner
8aea8feb3d
gn: Clean up afnumpy package definition
3 years ago
Efraim Flashner
c0679d473d
ruby-mechanize: Remove unused arguments field.
3 years ago
Efraim Flashner
140b63977d
python-version: Remove redundant build-system declaration.
3 years ago
Efraim Flashner
dae92276b5
fixup hyphy package definition
3 years ago
73227ba719
add python-2.4
3 years ago
d8a06ad808
Use module (gnu packages cran). Change to python2-htmlgen
* Use module (gnu packages cran) to get access to r-wgcna
* Change the dependency to python2-htmlgen which is the newer package
supporting both python2 and python3
3 years ago
888dcd025b
Update the version of python-htmlgen
* Update the version of python-htmlgen to 1.2.2
3 years ago
86c78f97e4
Remove comments
* Remove comments referring to python2-piddle and python2-pil1
dependencies.
3 years ago
f5bc342188
Add (gnu packages python-xyz) module.
* To find definitions of some packages like python2-pillow and
python2-setuptools, there was need to use the (gnu packages
python-xyz) module. This commit imports that module.
4 years ago
f5ffd9d54d
Merge branch 'master' of gitlab.com:genenetwork/guix-bioinformatics
4 years ago
70658e4b52
gn: Add new dependency.
* gn/packages/genenetwork2.scm (python-pillow): New dependency.
4 years ago
7a5ba50f1d
Use sqlite module.
4 years ago
9b8bb5bf25
Add module
* python2-eventlet moved to gnu/packages/python-xyz.scm
4 years ago
4cb594f75e
gn: Add dependency
* gn/packages/edash (python-flask-cors): Add dependency to edash.
4 years ago
0ea823c1a4
gn: Add new package
* gn/packages/edash.scm (python-flask-cors): New variable.
4 years ago
b941359339
gn: Add python-schedule as dependency
* gn/packages/edash.scm (python-schedule): New dependency.
4 years ago
0e138a1739
CWL
4 years ago
fae40327ce
Add glibc-locales as dependency
* python-click is very specific about the locales, and since it is a
dependency, ensure that the glibc-locales package is linked to, to
prevent the locales from being removed on `guix gc` or when a user
runs `guix package -u` on their main profile.
4 years ago
ff6429affa
Comment out problematic packages
* Comment out python-pygit2 which doesn't seem to be used, and fails to
build.
* Comment out python-ipython which might be needed (not sure), but fails
to build.
4 years ago
48670eaf1d
Merge branch 'master' of gitlab.com:genenetwork/guix-bioinformatics
4 years ago
3825ddc719
gn: Add new package
* gn/packages/edash.scm (python-connexion): New variable.
4 years ago
dc4e9ef049
gn: Fix bugs
* After updating guix, fix some bugs here and there leading to build
issues.
4 years ago
fd59266f08
gn: Add new package
* gn/packages/edash.scm (python-aiohttp-3.4.4): New variable.
4 years ago
c5ab676cc6
gn: python-pytest-timeout
* gn/packages/edash.scm (python-pytest-timeout): New variable.
4 years ago
f0cbb37843
gn: Add new package
* gn/packages/edash.scm (python-async-timeout-3.0.1): New variable.
4 years ago
58cebd37c6
gn: Add new package
* gn/packages/edash.scm (python-swagger-ui-bundle): New variable.
4 years ago
9e24131d0d
gn: Add new package
* gn/packages/edash.scm (python-openapi-spec-validator):
New variable.
4 years ago
00a0610bf8
gn: Add new package
* gn/packages/edash.scm (python-aiohttp-jinja2): New variable.
4 years ago
ad5a65a1bb
gn: Add new package
* gn/packages/edash.scm (python-pytest-aiohttp): New variable.
4 years ago
7c12b67978
gn: Add new package
* gn/packages/edash.scm (python-testfixtures): New variable.
4 years ago
9c97551054
gn: Add new package
* gn/packages/edash.scm (python-clickclick): New variable.
4 years ago
818f932add
gn: Add new package
* gn/packages/edash.scm (python-tests): New package.
4 years ago
a5da857d71
gn: Add new package
* gn/packages/edash.scm (python-ujson): New package.
4 years ago
e7fa1c950f
gn: Add new package
* gn/packages/edash.scm (python-python-version): New package.
4 years ago
9e84151973
CWL: fetching from git repo to get the latest
4 years ago
2372ecc00b
CWL final packages - tests pass in principle (except for some networking)
4 years ago
Efraim Flashner
Efraim Flashner