8dbbd10f02
gn: genenetwork2: Update to 3.11-2.3cfd0ec.
* gn/packages/crates-io.scm (genenetwork2) Update to
3.11-2.3cfd0ec.
1 day ago
5a3e8ff885
gn: genenetwork3: Update to 0.1.0-2.6db3b2a.
* gn/packages/crates-io.scm (genenetwork3) Update to
0.1.0-2.6db3b2a.
1 day ago
c6c3140efd
gn: gn-rust-correlation: Update to 0.1.4-0.09c579f.
* gn/packages/crates-io.scm (gn-rust-correlation) Update to
0.1.4-0.09c579f.
1 day ago
d2c514bd43
gn: gn-rust-correlation: Update to 0.1.4-0.3492daa.
* gn/packages/crates-io.scm (gn-rust-correlation) Update to
0.1.4-0.3492daa.
1 week ago
d7834b958e
gn: javascript-jquery-ui: Update to 1.13.2
* gn/packages/javascript.scm (javascript-jquery-ui): Update to 1.13.2.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2 weeks ago
ae99c2a4f7
gn: javascript-jquery-ui: Remove duplicate package.
javascript-jquery-ui@1.9.1 is packaged twice
* gn/packages/javascript.scm (javascript-jquery-ui): Delete duplicate package.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2 weeks ago
2396177020
gn: genenetwork2: Update to 3.11-2.85ad783.
* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.85ad783.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2 weeks ago
198a8fc1a6
gn: genenetwork3: Update it
* gn/packages/genenetwork.scm (commit): Update it.
(source): Update hash.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
3 weeks ago
Efraim Flashner
96f6cf23d9
gn: busco: Update to 5.4.1.
3 weeks ago
Efraim Flashner
57ba3dac9c
gnu: pplacer: Fix building.
* gn/packages/ocaml.scm (ocaml4.07-lwt-5.5.0): New variable.
(build-with-ocaml4.07): New procedure.
* gn/packages/bioinformatics.scm (pplacer): Wrap with
build-with-ocaml4.07.
3 weeks ago
Efraim Flashner
0de2d3fbf3
gn: Add r-bracer
3 weeks ago
53a2060ac6
gn: Update gn-rust-correlation
* gn/packages/crates-io.scm (commit): Update it.
(source): Update hash.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
4 weeks ago
91dbb4f46c
gn: genenetwork2: Add gn-rust-correlation.
* gn/packages/genenetwork.scm:
(genenetwork2) [propagated-inputs]: Add gn-rust-correlations.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
4 weeks ago
Arun Isaac
e4d084e371
gn: tissue: Update to 0.1.0-3.6d6285d.
* gn/packages/gemini.scm (tissue): Update to 0.1.0-3.6d6285d.
[inputs]: Add guile-filesystem.
1 month ago
Arun Isaac
032a3541c6
gn: tissue: Update to 0.1.0-2.b15edb1.
* gn/packages/gemini.scm (tissue): Update to 0.1.0-2.b15edb1.
2 months ago
Arun Isaac
c45403e3bf
gn: tissue: Update to 0.1.0-1.fd6668c.
* gn/packages/gemini.scm (tissue): Update to 0.1.0-1.fd6668c.
2 months ago
Bonface Munyoki
de3f9fcbca
gn: genenetwork3: Add gn-rust-correlation.
* gn/packages/genenetwork.scm: Import module crates-io.
(genenetwork3) [propagated-inputs]: Add gn-rust-correlations.
2 months ago
f6d7174086
gn: Add gn-rust-correlation.
* gn/packages/crates-io.scm (gn-rust-correlation): New variable
Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2 months ago
6384c60b56
gn: Add rust-gsl.
* gn/packages/crates-io.scm (rust-gsl): New variable.
Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2 months ago
bff5748124
gn: Add rust-gsl-sys.
* gn/packages/crates-io.scm (rust-gsl-sys): New variable.
Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2 months ago
Arun Isaac
1eecdf784b
gn: tissue: Update to 0.1.0-0.2866d0c.
* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.2866d0c.
2 months ago
Arun Isaac
a9c7cea2cb
gn: tissue: Update to 0.1.0-0.2ef55e6.
* gn/packages/gemini.scm (tissue): Update to 0.1.0-0.2ef55e6.
2 months ago
Efraim Flashner
580b558125
gn: gitea: Update to 1.15.11.
2 months ago
Arun Isaac
f619dde504
gn: tissue: Update to 0.1.0-0.983fc85.
* gn/packages/gemini.scm: Do not import (gnu packages
version-control). Import (gnu packages guile-xyz) and (guix gexp).
(tissue): Update to 0.1.0-0.983fc85.
2 months ago
Bonface Munyoki
4628ad7235
gn: genenetwork2: Update it
* gn/packages/genenetwork.scm (commit): Update it.
(source): Update hash.
2 months ago
Bonface Munyoki
abbc7e69b0
gn: Update genenetwork3
* gn/packages/genenetwork.scm (commit): Update it.
(source): Update hash.
(propagated-inputs): Remove python-ipfshttpclient.
2 months ago
Efraim Flashner
b00c31bbe5
gn: Add quast.
2 months ago
Efraim Flashner
86e0be1383
gn: metaeuk: Fix building package.
2 months ago
Arun Isaac
98f6608dfd
gn: genenetwork3: Use upstream python-pingouin.
* gn/packages/genenetwork.scm (python-seaborn-without-tests,
python-pingouin-with-working-python-seaborn): Delete variables.
(genenetwork3)[propagated-inputs]: Replace
python-pingouin-with-working-python-seaborn with upstream
python-pingouin.
2 months ago
Arun Isaac
7102eccf44
Update guix dependency to 6f75565b4ec3b8a7247699c327a3b3196c787f76.
2 months ago
Arun Isaac
4c9b48ead1
Update guix dependency to 824f2afcf0ffa7d515b04e360fa49a6b0c4a7753.
2 months ago
Arun Isaac
1437bd3cc9
Depend on specific commit of Guix upstream.
* .guix-channel: Depend on specific commit of Guix upstream.
* README.org: Update recommended channels.scm and explain dependence
on specific commit.
2 months ago
Bonface Munyoki
c107410797
gn: Update genenetwork3
* gn/packages/genenetwork.scm (commit): Update it.
(source): Update hash.
(propagated-inputs): Add python-lmdb.
2 months ago
Efraim Flashner
30e50263e9
gn: hap.py: Add previously missing inputs.
2 months ago
Efraim Flashner
6642ad1162
gn: Fix building python2-bx-python.
2 months ago
Efraim Flashner
6b0bae3509
gn: pplacer-scripts: Update argument field.
2 months ago
Efraim Flashner
921d419d9b
gn: python2-biopython: Fix building package.
2 months ago
Efraim Flashner
2777ca68de
gn: Fix building python2-rpy2.
2 months ago
Efraim Flashner
2adf50b8cd
gn: Hide inputs which have been dropped by Guix.
2 months ago
Efraim Flashner
2c7eabb743
gn: Add missing module imports
2 months ago
Efraim Flashner
886e3956c0
gn: cleanup yaj imports
2 months ago
Arun Isaac
e8b5eed0f1
gn: Add python2-biopython.
python2-biopython has been removed from Guix upstream.
* gn/packages/bioinformatics.scm (python2-biopython): New variable.
3 months ago
Arun Isaac
bab046a321
gn: bioinformatics: Import (gnu packages ocaml).
* gn/packages/bioinformatics.scm: Import (gnu packages ocaml) required
by dependencies of pplacer.
3 months ago
Arun Isaac
b5b6203072
gnu: Add pplacer.
pplacer and pplacer-scripts have been removed from Guix upstream.
* gn/packages/bioinformatics.scm (pplacer, pplacer-scripts): New
variables.
3 months ago
Arun Isaac
4ea3d37f52
gnu: Add python-pytest-runner-2.
python-pytest-runner-2 has been removed from Guix upstream.
* gn/packages/bioinformatics.scm (python-pytest-runner-2): New
variable.
3 months ago
Efraim Flashner
fd8f6bf959
gn: Adjust vg for other architectures
3 months ago
Efraim Flashner
e5bdf3309e
ruby-cbor upstreamed
3 months ago
d0db34e422
New dependency: (genenetwork3: diffutils)
- Genenetwork3 depends on diffutils
3 months ago
a0c0de89b4
genenetwork-qc: Update the release
3 months ago
7da33ecd14
Add definition for genenetwork-qc
Add a package definition for the GeneNetwork Quality Control
application.
3 months ago
Frederick Muriuki Muriithi
Efraim Flashner
Arun Isaac