Efraim Flashner
9e69e5917e
gn: Update BNW to 1.3-5.73ba588.
2 days ago
Efraim Flashner
e7e0a5b709
gn: Update gfaffix to 0.1.2.2.
5 days ago
Efraim Flashner
6b7e7e6299
gn: Upstream julia packages
5 days ago
Bonface Munyoki
61c10fe198
gn: Update genenetwork3 to 0.0.1-guix-77c274b
1 week ago
Efraim Flashner
29025578f9
gn: julia upstreaming changes
2 weeks ago
Efraim Flashner
a57961ff61
gn: kaleido code clean-up
2 weeks ago
Efraim Flashner
dd13ae09c6
gn: julia packages upstreamed
2 weeks ago
Efraim Flashner
8e59af5447
gn: Add minia.
2 weeks ago
Efraim Flashner
75e92b9503
kaleido builds and installs
3 weeks ago
Efraim Flashner
b8891af429
WIP kaleido
3 weeks ago
Efraim Flashner
76d726a77e
WIP kaleido
3 weeks ago
Efraim Flashner
e979f3e271
WIP packaging (python-)kaleido
3 weeks ago
7d29f66403
gn: Add r-wgcna, r-rjson to genenetwork3.
* gn/packages/genenetwork.scm(genenetwork3) [propagated-inputs]: Add r-wgcna an r-rjson
3 weeks ago
Bonface Munyoki
e80fe4ddcf
gn: javascript-font-awesome: Add "webfonts" directory
* gn/packages/javascript.scm (javascript-font-awesome)[arguments]: Copy
font-awesome directory to the target directory.
3 weeks ago
Efraim Flashner
5f66ae588b
gn: julia packaging updates, for upstreaming
4 weeks ago
Efraim Flashner
0684b02dac
gn: Use known good binary version of direct.so for genenetwork1
4 weeks ago
Efraim Flashner
8bd585606b
gn: julia updates
1 month ago
Efraim Flashner
6b358542f5
gn: prep for more julia package upstreaming
2 months ago
Efraim Flashner
90b466488a
Adjust to new multi-target bootloader configs
2 months ago
Erik Garrison
b0d23a9508
update pangenie
1 month ago
Efraim Flashner
78e68d7f60
gn: update genecup to 1.6.
2 months ago
01cbe5a2e9
Moved packages into past/genenetwork1 and packages/pangenome to reduce chance of
breaking the main genenetwork packages.
2 months ago
eb97761d7f
Remove golang module loader
2 months ago
82d0c5cc93
genenetwork[23]: updated git checkout and commented out DAG generation
2 months ago
c47ed18241
Removed tls warning
2 months ago
cabac15be8
Removed tls to remove warnings
2 months ago
9565dbbf4e
gemma: bump to 0.98.5-pre
2 months ago
cffb080134
gemma-wrapper: update to 0.99.3
2 months ago
Efraim Flashner
e1b776b1d7
gn: Add missing import
2 months ago
Efraim Flashner
6b05f2e196
gn: make sure we use the correct rust version
2 months ago
Bonface Munyoki
ac3cdf57e7
Remove csv-diff from channel.
This is already packaged upstream.
* gn/packages/genenetwork.scm: Remove "(gn packages golang)" import.
* gn/packages/golang.scm: Delete file.
2 months ago
Bonface Munyoki
495712f5d0
gn: Add toolbar overlay for debugging genenetwork2
* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add
python-flask-debugtoolbar
2 months ago
Bonface Munyoki
55e6f9dd0d
gn: Add python-flask-debugtoolbar.
* gn/packages/python.scm (python-flask-debugtoolbar): New variable.
2 months ago
Efraim Flashner
fef68e9c57
gn: start moving calculated files to build separately
2 months ago
Efraim Flashner
d7e42fd848
openssl-1.0 deprecated upstream, moved to guix-past
2 months ago
Efraim Flashner
5a810426d7
gn: genenetwork2: Don't hardcode python version.
2 months ago
Bonface Munyoki
9d62e687b3
gn: genenetwork: Remove "#:python ,python-wrapper" from "arguments"
This fixes this error:
guix package: error: /home/bonface/projects/guix-bioinformatics/gn/packages/genenetwork.scm:295:4: package `genenetwork2@3.11-guix-84cbf35' has an invalid input: ("python" python-wrapper)
2 months ago
Efraim Flashner
b6761f9779
gn: Update gitea to 1.14.6.
2 months ago
Efraim Flashner
ba96f981eb
gn: fix genenetwork2 package definition
2 months ago
Efraim Flashner
8ad9768e05
gn: Add pirs.
2 months ago
Efraim Flashner
08d32dfa56
gn: Add pbsim2.
2 months ago
Efraim Flashner
4de2b7e3fa
gn: Add pangenie.
2 months ago
Efraim Flashner
ee9e292453
fixup genenetwork2
2 months ago
Efraim Flashner
4865664348
gn: Adjust genenetwork2 for removal of python2-genenetwork2
2 months ago
f46cc3c4fb
gemma.scm: muck out old stuff
2 months ago
3442513854
python2-genenetwork2: remove unused Python2 version of genenetwork
2 months ago
cdf65fa27f
shunit2: rename to shunit2-old, so as not to conflict with upstream
2 months ago
Bonface Munyoki
8fd543b687
gn: Update genenetwork3 to 0.0.1-guix-487e50e
2 months ago
Efraim Flashner
1430f96afe
gn: Upstream some rust crates
2 months ago
Bonface Munyoki
c1e1bf49b9
gn: genenetwork3: Add csvdiff as a propagated input
2 months ago
Alexander Kabui
