Browse Source

gn: update bio-ruby

pull/8/head
Efraim Flashner 2 years ago
parent
commit
fa6fd8f305
Signed by: efraim GPG Key ID: 41AAE7DCCA3D8351
  1. 47
      gn/packages/ruby.scm

47
gn/packages/ruby.scm

@ -95,30 +95,31 @@ a focus on simplicity and productivity.")
(home-page "https://ruby-lang.org")
(license license:ruby)))
(define-public bio-vcf ; guix ready with tests
(define-public bio-vcf ; guix ready, minus tests not passing
(package
(name "bio-vcf")
(version "0.9.2")
(source
(origin
(method url-fetch)
(uri (rubygems-uri "bio-vcf" version))
(sha256
(base32
"1007bn0w8l11q867lxsyqnk0vgvv12skvk9gyglv7g44knr5vh4j"))))
(build-system ruby-build-system)
(arguments
`(#:tests? #f ; There are no tests.
))
(synopsis
"Smart lazy multi-threaded parser for VCF format with useful
filtering and output rewriting (JSON, RDF etc.)")
(description
"Smart lazy multi-threaded parser for VCF format with useful
filtering and output rewriting (JSON, RDF etc.)")
(home-page
"http://github.com/pjotrp/bioruby-vcf")
(license expat)))
(name "bio-vcf")
(version "0.9.4")
(source
(origin
(method url-fetch)
(uri (rubygems-uri "bio-vcf" version))
(sha256
(base32
"1xpll1pnpr5jxjdyydfw79ydz6l6lfhy6fg2gys8s3my9vwaf3ld"))))
(build-system ruby-build-system)
(native-inputs
`(("ruby-cucumber" ,ruby-cucumber)
("ruby-rake" ,ruby-rake)))
(synopsis "Smart VCF parser DSL")
(description
"Bio-vcf provides a @acronym{DSL, domain specific language} for processing
the VCF format. Record named fields can be queried with regular expressions.
Bio-vcf is a new generation VCF parser, filter and converter. Bio-vcf is not
only very fast for genome-wide (WGS) data, it also comes with a filtering,
evaluation and rewrite language and can output any type of textual data,
including VCF header and contents in RDF and JSON.")
(home-page "http://github.com/vcflib/bio-vcf")
(license license:expat)))
(define-public bio-table ; guix ready with tests
(package

Loading…
Cancel
Save