Patching Druntime for sambamba

gn/packages/bioinformatics.scm

@@ -924,7 +924,7 @@ association studies (GWAS).")
   (let ((commit "91096e78c81162f855b1044a4b2d41895bd27262"))
     (package
       (name "sambamba")
-      (version (string-append "0.6.6-pre1-" (string-take commit 7)))
+      (version (string-append "0.6.6-pre2-" (string-take commit 7)))
       (source (origin
         (method git-fetch)
         (uri (git-reference

gn/packages/ldc.scm

@@ -177,6 +177,7 @@
                    "https://github.com/ldc-developers/druntime/archive/ldc-v"
                    version2 ".tar.gz"))
              (file-name (string-append "ldc-druntime-" version2 ".tar.gz"))
+             (patches (search-patches "ldc-druntime-finiTLSRanges.patch"))
              (sha256
               (base32
                "07qvrqj6vgakd6qr4x5f70w6zwkzd1li5x8i1b5ywnds1z5lnfp6"))))
@@ -202,10 +203,10 @@
                 (uri (string-append
                     "https://github.com/dlang/tools/archive/"
                     version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
-              (sha256
-               (base32
-                "0ryn4fv1mj8c8d7y4lrr43baahl3z7sk5bryj9kd829paz573va6"))))
+                (file-name (string-append name "-" version ".tar.gz"))
+                (sha256
+                 (base32
+                  "0ryn4fv1mj8c8d7y4lrr43baahl3z7sk5bryj9kd829paz573va6"))))
       (build-system gnu-build-system)
       (arguments
        '(#:phases

ldc-druntime-finiTLSRanges.patch

@@ -0,0 +1,24 @@
+diff --git a/src/rt/sections_elf_shared.d b/src/rt/sections_elf_shared.d
+index a1ea73a..243e3f6 100644
+--- a/src/rt/sections_elf_shared.d
++++ b/src/rt/sections_elf_shared.d
+@@ -149,7 +149,8 @@ version (Shared)
+ 
+     void finiTLSRanges(Array!(ThreadDSO)* tdsos)
+     {
+-        tdsos.reset();
++        // Disabling like static version - not sure this one is misbehaving though
++        // tdsos.reset();
+     }
+ 
+     void scanTLSRanges(Array!(ThreadDSO)* tdsos, scope ScanDG dg) nothrow
+@@ -234,7 +235,8 @@ else
+ 
+     void finiTLSRanges(Array!(void[])* rngs)
+     {
+-        rngs.reset();
++        // Throws exception, see https://github.com/lomereiter/sambamba/issues/219#issuecomment-275838455
++        // rngs.reset();
+     }
+ 
+     void scanTLSRanges(Array!(void[])* rngs, scope ScanDG dg) nothrow