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gn: Add python24-direct.

* gn/packages/python24.scm (python24-direct): New variable.
* gn/packages/genenetwork.scm (genenetwork1)[propagated-inputs]: Add
python24-direct.
wip-tensorflow
Efraim Flashner 1 year ago
parent
commit
ac3535858a
Signed by: efraim GPG Key ID: 41AAE7DCCA3D8351
  1. 1
      gn/packages/genenetwork.scm
  2. 71
      gn/packages/python24.scm

1
gn/packages/genenetwork.scm

@ -758,6 +758,7 @@ written in C")
(propagated-inputs
`(("python" ,python-2.4)
("httpd-with-mod-python" ,httpd22-with-mod-python)
("python-direct" ,python24-direct)
("python-htmlgen-GN1" ,python24-htmlgen-GN1)
("python-json-GN1" ,python24-json-GN1)
("python-mysqlclient" ,python24-mysqlclient)

71
gn/packages/python24.scm

@ -10,6 +10,7 @@
#:use-module (past packages python)
#:use-module (gnu packages compression)
#:use-module (gnu packages databases)
#:use-module (gnu packages gcc)
#:use-module (gnu packages maths)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages tls)
@ -385,3 +386,73 @@ for Python. The design goals are:
@item Compatibility with MySQL-3.23 and later
@end itemize")
(license license:gpl2+)))
(define-public python24-direct
(package
(name "python24-direct")
(version "1.0.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "DIRECT" version))
(sha256
(base32
"1d4cf9hynlr42hq0k8w7j4qi45rkrgil332sh0hymklxgmyi21h5"))
(modules '((guix build utils)))
(snippet
'(begin
;; Files are autogenerated using f2py.
(delete-file "src/direct-f2pywrappers.f")
(delete-file "src/directmodule.c")
#t))))
(build-system python-build-system)
(arguments
`(#:python ,python-2.4
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'patch-source
(lambda _
(substitute* "DIRECT/__init__.py"
(("\\.direct") "direct"))
#t))
(replace 'check
(lambda* (#:key tests? inputs outputs #:allow-other-keys)
(when tests?
(add-installed-pythonpath inputs outputs)
(with-directory-excursion "test"
(invoke "python" "test_direct.py")))
#t))
(add-after 'install 'copy-library
(lambda* (#:key outputs #:allow-other-keys)
(with-directory-excursion
(string-append (assoc-ref outputs "out")
"/lib/python2.4/site-packages")
(copy-file "DIRECT/direct.so" "direct.so"))
#t))
(replace 'install-license-files
(lambda* (#:key outputs #:allow-other-keys)
(install-file "COPYRIGHT"
(string-append (assoc-ref outputs "out")
"/share/doc/" ,name "-" ,version))
#t)))))
(propagated-inputs
`(("python24-numpy" ,python24-numpy-1.2)))
(inputs
`(("gfortran" ,gfortran)))
(native-inputs
`(("python24-nose" ,python24-nose)
("python24-setuptools" ,python24-setuptools)))
;; Also seems to be here: https://github.com/amitibo/pydirect
(home-page "http://code.google.com/p/pydirect/")
(synopsis "Python wrapper to the DIRECT algorithm")
(description
"DIRECT is a method to solve global bound constraint optimization problems
and was originally developed by D. R. Jones, C. D. Perttunen and B. E. Stuckmann.
@code{pydirect} is a python wrapper around DIRECT. It enables using DIRECT from
the comfort of the great Python scripting language.
The @code{pydirect} package uses the fortan implementation of DIRECT written by
Joerg.M.Gablonsky, DIRECT Version 2.0.4. More information on the DIRECT
algorithm can be found in Gablonsky's
@url{http://repository.lib.ncsu.edu/ir/bitstream/1840.16/3920/1/etd.pdf,
thesis}.")
(license license:expat)))

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