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@@ -157,6 +157,48 @@ precision. It also performs bootstrap resampling to estimate the |
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confidence region for the location of a putative QTL.") |
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(license license:gpl2))) |
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(define-public gemma |
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(let ((commit "2de4bfab3")) |
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(package |
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(name "gemma") |
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(version (string-append "0.9.5-" commit )) |
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(source (origin |
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(method git-fetch) |
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(uri (git-reference |
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(url "https://github.com/genenetwork/GEMMA.git") |
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(commit commit))) |
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(file-name (string-append name "-" commit)) |
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(sha256 |
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(base32 |
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"1drffdgwbzgiw9sf55ghl3zjv58f8i9kfz0zys5mp6n06syp4ira")))) |
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(inputs `( |
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("gsl" ,gsl) |
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("lapack" ,lapack) |
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("zlib" ,zlib) |
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)) |
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(build-system gnu-build-system) |
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(arguments |
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`(#:make-flags '(" FORCE_DYNAMIC=1") |
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#:phases |
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(modify-phases %standard-phases |
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(delete 'configure) |
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(add-before 'build 'bin-mkdir |
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(lambda _ |
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(mkdir-p "bin") |
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)) |
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(replace 'install |
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(lambda* (#:key outputs #:allow-other-keys) |
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(let ((out (assoc-ref outputs "out"))) |
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(install-file "bin/gemma" (string-append out "/bin")))))) |
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#:tests? #f)) |
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(home-page "") |
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(synopsis "Tool for genome-wide efficient mixed model association") |
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(description "GEMMA is the software implementing the Genome-wide |
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Efficient Mixed Model Association algorithm for a standard linear |
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mixed model and some of its close relatives for genome-wide |
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association studies (GWAS).") |
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(license license:gpl3)))) |
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(define-public genenetwork1 |
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(let ((commit "d622c803b")) |
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@@ -231,6 +273,7 @@ confidence region for the location of a putative QTL.") |
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)) |
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(inputs `( |
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("mysql" ,mysql) |
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("gemma" ,gemma) |
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("nginx" ,nginx) |
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("python2-flask" ,python2-flask) |
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("python2-htmlgen-gn" ,python2-htmlgen-gn) |
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