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gemma-gn2: updated to latest

pull/2/head
pjotrp 1 year ago
parent
commit
697a8d85dd
  1. 2
      README.org
  2. 10
      gn/packages/gemma.scm
  3. 1
      gn/packages/yaj.scm

2
README.org

@ -61,6 +61,8 @@ Install slurm with
* Common Workflow Language (CWL)
/Note that CWL moved into Guix master!/
Install the common workflow language tool cwltool from this repo with
#+BEGIN_SRC bash

10
gn/packages/gemma.scm

@ -101,10 +101,10 @@
(define-public gemma-gn2 ; Version used in GeneNetwork. Guix candidate - generic openblas version
(let ((commit "97547ee82e0bd1cc2210612415b0ceb135dbba6d"))
(let ((commit "f623b4775d47b2c2697a4925bd044412a7db49d3"))
(package
(name "gemma-gn2")
(version (string-append "0.98.2-" (string-take commit 7)))
(version (string-append "0.98.3-" (string-take commit 7)))
(source (origin
(method git-fetch)
(uri (git-reference
@ -113,7 +113,7 @@
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
"0p6pw4gm5fqr4yb9vklgj5abvqazmp1kk9cg3l2n8qsrj1p7j657"))))
"1p8a7kkfn1mmrg017aziy544aha8i9h6wd1x2dk3w2794wl33qb7"))))
; guix environment -C guix --ad-hoc gcc-toolchain gdb gsl openblas zlib bash ld-wrapper perl vim which
(inputs `(
("gsl" ,gsl)
@ -177,10 +177,10 @@ genome-wide association studies (GWAS).")
))
(define-public gemma-gn2-dev ; Dev version for GeneNetwork. Not a Guix candidate
(let ((commit "d53a04edc476d820de7a611cacc8b105115aa3cc"))
(let ((commit "f623b4775d47b2c2697a4925bd044412a7db49d3"))
(package
(name "gemma-gn2-dev")
(version (string-append "0.98.2-" (string-take commit 7)))
(version (string-append "0.98.3-" (string-take commit 7)))
(source (origin
(method git-fetch)
(uri (git-reference

1
gn/packages/yaj.scm

@ -45,7 +45,6 @@
#:use-module (gnu packages bootstrap)
#:use-module (gnu packages version-control)
#:use-module (gn packages bioinformatics)
#:use-module (gn packages gemma)
#:use-module (gn packages javascript)
#:use-module (gn packages phewas)
#:use-module (gn packages python)

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