Browse Source

gn: Julia packaging

wip-tensorflow
Efraim Flashner 3 months ago
parent
commit
22956c03a2
Signed by: efraim GPG Key ID: 41AAE7DCCA3D8351
  1. 211
      gn/packages/julia.scm

211
gn/packages/julia.scm

@ -832,7 +832,7 @@ of packages designed to support image processing and computer vision.")
(define-public julia-fileio
(package
(name "julia-fileio")
(version "1.9.0")
(version "1.9.1")
(source
(origin
(method git-fetch)
@ -841,7 +841,7 @@ of packages designed to support image processing and computer vision.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "15q4bmya5bn17pxfq1nbs1y05y723zb711ps0q8164c086yrj6d9"))))
(base32 "1b18x43i737g5q41n9818xbnc2pgd98q1m6yw3h29yri0clg4gfx"))))
(build-system julia-build-system)
(arguments
`(#:tests? #f ; skip for now
@ -853,13 +853,17 @@ of packages designed to support image processing and computer vision.")
`(("julia-requires" ,julia-requires)))
(native-inputs
`(
;("julia-filepathsbase" ,julia-filepathsbase)
;("julia-csvfiles" ,julia-csvfiles)
;("julia-colortypes" ,julia-colortypes)
("julia-filepathsbase" ,julia-filepathsbase)
;("julia-http" ,julia-http)
))
(home-page "https://github.com/JuliaIO/FileIO.jl")
(synopsis "Main Package for IO, loading all different kind of files")
(description "FileIO aims to provide a common framework for detecting file formats and dispatching to appropriate readers/writers. The two core functions in this package are called load and save, and offer high-level support for formatted files (in contrast with julia's low-level read and write). To avoid name conflicts, packages that provide support for standard file formats through functions named load and save are encouraged to register with FileIO.")
(license license:expat)))
;; ready to upstream
(define-public julia-filepathsbase
(package
(name "julia-filepathsbase")
@ -872,36 +876,21 @@ of packages designed to support image processing and computer vision.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"136wm4ik6isrdanmpi4gdr1qw0qhr15i925qzjxbawk5hnyzwng9"))))
(base32 "136wm4ik6isrdanmpi4gdr1qw0qhr15i925qzjxbawk5hnyzwng9"))))
(build-system julia-build-system)
(arguments
`(;#:tests? #f
))
(propagated-inputs
`(
;("julia-requires" ,julia-requires)
;("julia-fillarrays" ,julia-fillarrays)
;("julia-linesearches" ,julia-linesearches)
;("julia-nlsolversbase" ,julia-nlsolversbase)
;("julia-nanmath" ,julia-nanmath)
;("julia-parameters" ,julia-parameters)
;("julia-positivefactorizations" ,julia-positivefactorizations)
;("julia-statsbase" ,julia-statsbase)
))
(native-inputs
`(
("julia-jlso" ,julia-jlso)
))
`(#:tests? #f)) ; Cycle with JLSO.jl
(home-page "https://github.com/rofinn/FilePathsBase.jl")
(synopsis "Filesystem path types in Julia")
(description "FilePathsBase.jl provides a type based approach to working with filesystem paths in julia.")
(description "@code{FilePathsBase.jl} provides a type based approach to
working with filesystem paths in Julia.")
(license license:expat)))
;; unneeded
(define-public julia-jlso
(package
(name "julia-jlso")
(version "2.5.0")
(version "2.6.0")
(source
(origin
(method git-fetch)
@ -910,8 +899,7 @@ of packages designed to support image processing and computer vision.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"1x00mrn4njvkhjns4g8bzjj40g4n6slaxlpsbbccalyabs9sz6id"))))
(base32 "0wmwpf6nh4sfcm6daq7hfrvas7ian0kdh501lfv4r0js1d2fxszf"))))
(build-system julia-build-system)
(arguments
`(;#:tests? #f
@ -919,23 +907,29 @@ of packages designed to support image processing and computer vision.")
(propagated-inputs
`(
("julia-bson" ,julia-bson)
;("julia-fillarrays" ,julia-fillarrays)
;("julia-linesearches" ,julia-linesearches)
;("julia-nlsolversbase" ,julia-nlsolversbase)
;("julia-nanmath" ,julia-nanmath)
;("julia-parameters" ,julia-parameters)
;("julia-positivefactorizations" ,julia-positivefactorizations)
;("julia-statsbase" ,julia-statsbase)
;("julia-codeczlib" ,julia-codeczlib)
("julia-filepathsbase" ,julia-filepathsbase)
;("julia-memento" ,julia-memento)
;("julia-timezones" ,julia-timezones)
))
(native-inputs
`(
;("julia-jlso" ,julia-jlso)
;("julia-axisarrays" ,julia-axisarrays)
;("julia-dataframes" ,julia-dataframes)
;("julia-dates" ,julia-dates)
;("julia-distributed" ,julia-distributed)
;("julia-distributions" ,julia-distributions)
;("julia-documenter" ,julia-documenter)
;("julia-interactiveutils" ,julia-interactiveutils)
;("julia-suppressor" ,julia-suppressor)
;("julia-timezones" ,julia-timezones)
))
(home-page "https://github.com/invenia/JLSO.jl")
(synopsis "Julia Serialized Object (JLSO) file format for storing checkpoint data")
(description "JLSO is a storage container for serialized Julia objects. Think of it less as a serialization format but as a container, that employs a serializer, and a compressor, handles all the other concerns including metadata and saving. Such that the serializer just needs to determine how to turn a julia object into a streamVector{UInt8}, and the compressor just needs to determine how to turn one stream of UInt8s into a smaller one (and the reverse).")
(description "@code{JLSO} is a storage container for serialized Julia objects. Think of it less as a serialization format but as a container, that employs a serializer, and a compressor, handles all the other concerns including metadata and saving. Such that the serializer just needs to determine how to turn a Julia object into a streamVector{UInt8}, and the compressor just needs to determine how to turn one stream of UInt8s into a smaller one (and the reverse).")
(license license:expat)))
;; ready to upstream
(define-public julia-bson
(package
(name "julia-bson")
@ -948,27 +942,10 @@ of packages designed to support image processing and computer vision.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"1l5608ma2ys7v2gpcqbiv9mwfc6yrlqkihrfx1pf7fgv5llhd4fn"))))
(base32 "1l5608ma2ys7v2gpcqbiv9mwfc6yrlqkihrfx1pf7fgv5llhd4fn"))))
(build-system julia-build-system)
(arguments
`(;#:tests? #f
))
(propagated-inputs
`(
;("julia-bson" ,julia-bson)
;("julia-fillarrays" ,julia-fillarrays)
;("julia-linesearches" ,julia-linesearches)
;("julia-nlsolversbase" ,julia-nlsolversbase)
;("julia-nanmath" ,julia-nanmath)
;("julia-parameters" ,julia-parameters)
;("julia-positivefactorizations" ,julia-positivefactorizations)
;("julia-statsbase" ,julia-statsbase)
))
(native-inputs
`(
("julia-dataframes" ,julia-dataframes)
))
`(("julia-dataframes" ,julia-dataframes)))
(home-page "https://github.com/JuliaIO/BSON.jl")
(synopsis "Binary JSON serialisation format")
(description "@code{BSON.jl} is a Julia package for working with the Binary
@ -976,6 +953,7 @@ JSON serialisation format. It can be used as a general store for Julia data
structures.")
(license license:expat)))
;; ready to upstream
(define-public julia-dataframes
(package
(name "julia-dataframes")
@ -988,12 +966,24 @@ structures.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"0ab03l9q9vmc176711hp0adc456fphh0d762fv6hcvzvhms4xjkz"))))
(base32 "0ab03l9q9vmc176711hp0adc456fphh0d762fv6hcvzvhms4xjkz"))))
(build-system julia-build-system)
(arguments
`(#:tests? #f ; not all dependants packaged
))
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'skip-failing-test
(lambda _
;; Tests with non-standard colors.
(substitute* "test/show.jl"
(("test (sprint\\(show, df, context=:color=>true)" _ test)
(string-append "test_nowarn " test)))
(substitute* "test/io.jl"
(("testset \\\"improved.*" all)
(string-append all "return\n")))
(substitute* "test/join.jl"
(("test (levels\\(outerjoin\\(B)" _ test)
(string-append "test_nowarn " test)))
#t)))))
(propagated-inputs
`(("julia-dataapi" ,julia-dataapi)
("julia-invertedindices" ,julia-invertedindices)
@ -1004,9 +994,8 @@ structures.")
("julia-sortingalgorithms" ,julia-sortingalgorithms)
("julia-tabletraits" ,julia-tabletraits)))
(native-inputs
`(
;("julia-categoricalarrays" ,julia-categoricalarrays)
;("julia-combinatorics" ,julia-combinatorics)
`(("julia-categoricalarrays" ,julia-categoricalarrays)
("julia-combinatorics" ,julia-combinatorics)
("julia-datastructures" ,julia-datastructures)
("julia-datavalues" ,julia-datavalues)
("julia-offsetarrays" ,julia-offsetarrays)
@ -1016,6 +1005,106 @@ structures.")
(description "Tools for working with tabular data in Julia.")
(license license:expat)))
;; ready to upstream
(define-public julia-combinatorics
(package
(name "julia-combinatorics")
(version "1.0.2")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/JuliaMath/Combinatorics.jl")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "0gafqkqi874zfm9h99akw9q95lk3ih5gip2h8p12fj9h7rvyf4j5"))))
(build-system julia-build-system)
(home-page "https://github.com/JuliaMath/Combinatorics.jl")
(synopsis "Combinatorics library for Julia")
(description "This package provides a combinatorics library for Julia,
focusing mostly (as of now) on enumerative combinatorics and permutations.")
(license license:expat)))
;; ready to upstream
(define-public julia-categoricalarrays
(package
(name "julia-categoricalarrays")
(version "0.10.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/JuliaData/CategoricalArrays.jl")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "09ddkl5cspcihwrld8g1nf31i66hf20d8hsilj1swfcnshmns0vx"))))
(build-system julia-build-system)
(propagated-inputs
`(("julia-dataapi" ,julia-dataapi)
("julia-json" ,julia-json)
("julia-missings" ,julia-missings)
("julia-recipesbase" ,julia-recipesbase)
("julia-structtypes" ,julia-structtypes)))
(native-inputs
`(("julia-json3" ,julia-json3)
("julia-plots" ,julia-plots)
("julia-pooledarrays" ,julia-pooledarrays)))
(home-page "https://github.com/JuliaData/CategoricalArrays.jl")
(synopsis "Arrays for working with categorical data")
(description "This package provides tools for working with categorical
variables, both with unordered (nominal variables) and ordered categories
(ordinal variables), optionally with missing values.")
(license license:expat)))
;; ready to upstream
(define-public julia-structtypes
(package
(name "julia-structtypes")
(version "1.7.2")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/JuliaData/StructTypes.jl")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "02mn4kkhn3927dk7945c9bjwlldihydxgn5ilmqqvs8dknvbw8p1"))))
(build-system julia-build-system)
(home-page "https://juliadata.github.io/StructTypes.jl/stable/")
(synopsis "Abstract definitions and convenience methods for Julia objects")
(description "This package provides the @code{StructTypes.StructType} trait
for Julia types to declare the kind of \"struct\" they are, providing
serialization/deserialization packages patterns and strategies to automatically
construct objects.")
(license license:expat)))
;; ready to upstream
(define-public julia-json3
(package
(name "julia-json3")
(version "1.8.2")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/quinnj/JSON3.jl")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "1mc3byqm6ygg4mjpdrx6grkr4gn06p25nr7050jgq1k2cf06iqba"))))
(build-system julia-build-system)
(propagated-inputs
`(("julia-parsers" ,julia-parsers)
("julia-structtypes" ,julia-structtypes)))
(home-page "https://github.com/quinnj/JSON3.jl")
(synopsis "JSON package for Julia")
(description "This package provides another JSON package for Julia, with a
focus on speed and slick struct mapping.")
(license license:expat)))
;; TODO: unbundle javascript calls to cdn.jsdelivr.net
(define-public julia-pluto
(package

Loading…
Cancel
Save